CRAN submission failed with new message Apparent methods for exported generics not registered

[xrobin]

* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
ci:
  function(...)
ci.auc.delong:
  function(roc, conf.level)

ci:
  function(...)
ci.delong.paired:
  function(calcs, conf.level)

roc:
  function(...)
roc.utils.calc.coords:
  function(roc, thr, se, sp, best.weights)

roc:
  function(...)
roc.utils.max.thresholds.idx:
  function(thresholds, sp, se)

roc:
  function(...)
roc.utils.thr.idx:
  function(roc, x)

roc:
  function(...)
roc.utils.thresholds:
  function(predictor, direction)

roc:
  function(...)
roc.utils.topercent:
  function(x)

roc:
  function(...)
roc.utils.unpercent:
  function(x)

roc:
  function(...)
roc.utils.match.coords.input.args:
  function(x, threshold)

roc:
  function(...)
roc.utils.min.partial.auc.auc:
  function(auc)

roc:
  function(...)
roc.utils.perfs:
  function(threshold, controls, cases, direction)

roc:
  function(...)
roc.utils.max.partial.auc.auc:
  function(roc)

roc:
  function(...)
roc.utils.match.coords.ret.args:
  function(x, threshold)

roc:
  function(...)
roc.utils.optim.crit:
  function(se, sp, max, weights, method)

roc:
  function(...)
roc.utils.is.perfect.curve:
  function(roc)

roc:
  function(...)
roc.utils.perfs.all.test:
  function(thresholds, controls, cases, direction)

roc:
  function(...)
roc.utils.max.partial.auc:
  function(partial.auc, percent)

roc:
  function(...)
roc.utils.perfs.all.safe:
  function(thresholds, controls, cases, direction)

roc:
  function(...)
roc.utils.perfs.dens:
  function(threshold, x, dens.controls, dens.cases, direction)

roc:
  function(...)
roc.utils.perfs.all.fast:
  function(thresholds, controls, cases, direction)

roc:
  function(...)
roc.utils.min.partial.auc:
  function(partial.auc, percent)

smooth:
  function(...)
smooth.roc.logcondens.smooth:
  function(roc, n)

smooth:
  function(...)
smooth.roc.logcondens:
  function(roc, n)

smooth:
  function(...)
smooth.roc.binormal:
  function(roc, n)

var:
  function(...)
var.theta.obuchowski:
  function(theta, kappa)

var:
  function(...)
var.delta.covvar:
  function(covvar)

var:
  function(...)
var.params.obuchowski:
  function(A, B, kappa, FPR1, FPR2)

var:
  function(...)
var.roc.obuchowski:
  function(roc)

power.roc.test:
  function(...)
power.roc.test.optimize.auc.function:
  function(x, ncontrols, ncases, zalpha, zbeta)

cov:
  function(...)
cov.roc.obuchowski:
  function(roc1, roc2)

cov:
  function(...)
cov.params.obuchowski:
  function(A1, B1, A2, B2, rn, ra, kappa, FPR11, FPR12, FPR21, FPR22)

sort:
  function(x, decreasing, ...)
sort.smooth.roc:
  function(roc)

sort:
  function(x, decreasing, ...)
sort.roc:
  function(roc)

print:
  function(x, ...)
print.dataline:
  function(x)

Apparent methods for exported generics not registered:
  ci.auc.bootstrap ci.auc.delong ci.delong.paired cov.params.obuchowski
  cov.roc.obuchowski ggroc.multiclass.roc multiclass.roc.multivariate
  multiclass.roc.univariate power.roc.test.optimize.auc.function
  roc.cc.nochecks roc.rp.nochecks roc.utils.calc.coords
  roc.utils.dumb.progress.bar roc.utils.extract.formula
  roc.utils.get.progress.bar roc.utils.is.perfect.curve
  roc.utils.match.coords.input.args roc.utils.match.coords.ret.args
  roc.utils.max.partial.auc roc.utils.max.partial.auc.auc
  roc.utils.max.thresholds.idx roc.utils.min.partial.auc
  roc.utils.min.partial.auc.auc roc.utils.optim.crit roc.utils.perfs
  roc.utils.perfs.all.fast roc.utils.perfs.all.safe
  roc.utils.perfs.all.test roc.utils.perfs.dens roc.utils.thr.idx
  roc.utils.thresholds roc.utils.topercent roc.utils.unpercent
  smooth.roc.binormal smooth.roc.density smooth.roc.fitdistr
  smooth.roc.logcondens smooth.roc.logcondens.smooth var.delta.covvar
  var.params.obuchowski var.roc.bootstrap var.roc.obuchowski
  var.theta.obuchowski
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

Can be reproduced by black magic (thanks joshuaulrich/quantmod#375 for finding it out):

_R_CHECK_S3_METHODS_SHOW_POSSIBLE_ISSUES_=true R CMD check pROC_1.18.1.tar.gz