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I know this is late and maybe not the most optimal solution, but you can hide the unnecessary labels with a CSS selector like this: .ct-series-a .ct-bar-label { dispaly: none; }
I'm finding that because the series gets rendered in its own element. So labels on the fist stack are hidden by the following stack. setting z-index doesn't help because its in its own element. Only solution atm was to move the labels down so that they are sitting on their bar and not on top of it.
When stacked bar is used it prints it multiple times
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