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Colocalization

Colocalization in overlapped variants only to avoid inconsistent finemap

Inputs

  • map1: mapping of the summary data 1
  • list1: summaries in the list1
  • bgenInf1: bgen information for the first dataset
  • sigThresh1: float treshold of significant loci
  • Replicate another set above ending with 2 for dataset 2, e.g. map2: mapping
  • windowKB 1500: finemap window size 1500KB

Output

  • merged: merged coloc results
  • list: coloc lists
  • finemapped1: finemap results for dataset 1
  • finemapped2: finemap results for dataset 2
  • colocs: coloc results

Bug report

Create an issue here. Created and maintained by Zhili