docs: Remove 2nd toctree and add advanced.md page

The second `.. toctree::` was not being rendered for some reason. Instead a new page `docs/advanced.md` has been created and serves as an index to the documentation which resides under `advanced/` with sub-headings for each section as I can envisage this growing as more functionality is added.
AFM-SPM · Oct 15, 2024 · b36aef2 · b36aef2
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diff --git a/docs/advanced.md b/docs/advanced.md
@@ -0,0 +1,10 @@
+# Advanced Documentation
+
+You can read more detailed information about the methods implemented in TopoStats in the pages below.
+
+## DNA Tracing
+
+- [Disordered Tracing](advanced/disordered_tracing.md)
+- [Nodestats](advanced/nodestats.md)
+- [Ordered Tracing](advanced/Ordered_tracing.md)
+- [Splining](advanced/splining.md)
diff --git a/docs/disordered_tracing.md → docs/advanced/disordered_tracing.md b/docs/disordered_tracing.md → docs/advanced/disordered_tracing.md
diff --git a/docs/nodestats.md → docs/advanced/nodestats.md b/docs/nodestats.md → docs/advanced/nodestats.md
diff --git a/docs/ordered_tracing.md → docs/advanced/ordered_tracing.md b/docs/ordered_tracing.md → docs/advanced/ordered_tracing.md
diff --git a/docs/splining.md → docs/advanced/splining.md b/docs/splining.md → docs/advanced/splining.md
diff --git a/docs/index.rst b/docs/index.rst
@@ -15,21 +15,13 @@ listed below to find out more.
     configuration
     contributing
     notebooks
+    advanced
     workflow
     data_dictionary
     related_software
     glossary
     faq
 
-.. toctree::
-    :maxdepth: 1
-    :caption: Advanced Documentation
-    advanced/disordered_tracing
-    advanced/nodestats
-    advanced/ordered_tracing
-    advanced/splining
-
-
 .. toctree::
    :maxdepth: 1
    :caption: API