adjust line numbers for Z=1e-6

.github/workflows/burn_cell_metal_chem_new.yml

@@ -3,7 +3,7 @@ name: burn_cell_metal_chem
 on: [pull_request]
 
 jobs:
-  burn_cell_metal_chem_1:
+  burn_cell_metal_chem:
     runs-on: ubuntu-latest
 
     steps:
@@ -38,7 +38,7 @@ jobs:
         if: ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
         run: cat unit_test/burn_cell_metal_chem/Backtrace.0
 
-      - name: Compare to stored output at Z = 1
+      - name: Compare to stored output for Z = 1
         run: |
           set -e
           cd unit_test/burn_cell_metal_chem
@@ -70,7 +70,7 @@ jobs:
             exit 1
           fi
 
-      - name: Compile and run for Z = 1e-6
+      - name: Run for Z = 1e-6
         run: |
           cd unit_test/burn_cell_metal_chem
           ./main1d.gnu.DEBUG.ex inputs_metal_chem_1e-6 amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out
@@ -79,11 +79,11 @@ jobs:
         if: ${{ failure() && hashFiles('unit_test/burn_cell_metal_chem/Backtrace.0') != '' }}
         run: cat unit_test/burn_cell_metal_chem/Backtrace.0
 
-      - name: Compare to stored output at Z = 1e-6
+      - name: Compare to stored output for Z = 1e-6
         run: |
           set -e
           cd unit_test/burn_cell_metal_chem
-          line_numbers=(4461 4463 4465 4467 4468 4471 4472 4475 4481 4486)
+          line_numbers=(4438 4440 4442 4444 4445 4448 4449 4452 4458 4463)
           threshold=0.01
           error_found=false
           for line_number in "${line_numbers[@]}"; do
@@ -92,16 +92,16 @@ jobs:
             echo "Line $line_number in test.out: $value1"
 
             value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out)
-            # Adjust the line number for reference_solution_1.0.out
-            reference_line_number=$((line_number - 24))
+            # Adjust the line number for reference_solution
+            reference_line_number=$((line_number + 12))
             value2=$(awk 'NR=='"$reference_line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution_1e-6.out)
 
             difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }')
 
             if (( $(echo "$difference > $threshold" | bc -l) )); then
               echo "Line number: $line_number"
               echo "Value in test.out: $value1"
-              echo "Value in reference_solution_1.0.out: $value2"
+              echo "Value in reference_solution_1e-6.out: $value2"
               echo "Difference between test and reference value is $difference, more than allowed threshold of $threshold"
               echo
               error_found=true