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SAF file out of sync #627

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JoaoNunes15 opened this issue Jun 17, 2024 · 0 comments
Open

SAF file out of sync #627

JoaoNunes15 opened this issue Jun 17, 2024 · 0 comments

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@JoaoNunes15
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Hello,

I was trying to calculate the FST parameters using the following code:

realSFS fst index /.../WNPL_Hyp.saf.idx /.../ENPL_Hyp.saf.idx -fstout WNPL_HypVsENPL_Hyp -sfs WNPL_HypVsENPL_Hyp_summedup.sfs -sites /.../FixedAlelles_Set3_Extracted.txt

and got the following error:

SAF file is out of sync contact developer
Mismatch at s:0 which is i=0 vs i=1 with pos1:783 pos2:5903

what could be the error for this? thank you!
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