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Issues list

covariates not used in association tests with .sample file.
#635 opened Sep 23, 2024 by RJDan
Should I downsample to same sequence depth when call snp using ANGSD
#634 opened Sep 14, 2024 by jiangzy26
1
"allocate too much memory" realSFS FST
#633 opened Sep 10, 2024 by jmhallas
doSaf 1 issue: "problems receiving data in [algoJoint] will exit"
#632 opened Sep 6, 2024 by msrigyan
Issue with angsd -doSaf 1 Not Generating Proper saf.idx File
#631 opened Aug 26, 2024 by shiwen999
bcf output file with "." at QUAL column
#630 opened Aug 6, 2024 by martaolmu
1
bcf file doesn't open
#628 opened Jul 12, 2024 by renatasoar3s
SAF file out of sync
#627 opened Jun 17, 2024 by JoaoNunes15
Problems with unsorted saf file chromoname
#626 opened Jun 10, 2024 by MboiTui
1
Killed
#625 opened May 29, 2024 by isnmn
1
estAvgError.R script error
#623 opened May 24, 2024 by lakshsesh97
0 sites retained after filtering when using -sites
#622 opened May 14, 2024 by henriquebatalha
1
angsd: realloc() error
#621 opened May 13, 2024 by iremdnzl
merging binary all 10 log genotype likelihood
#620 opened May 2, 2024 by elenaasensimartinez
Number of numbers output by realSFS
#619 opened Apr 24, 2024 by Erikacj
1
Missing windows in thetaStat
#618 opened Apr 19, 2024 by jbruxaux
[loadChr] Error loading fasta info from chr
#617 opened Mar 14, 2024 by dlema82
Population level theta with saf2theta
#616 opened Mar 6, 2024 by jmhallas
Contamination test, Error in dimnames(x)
#615 opened Feb 21, 2024 by asli1-han
Length of fastafile vs length of chr in BAM header
#614 opened Feb 15, 2024 by pedrosenna
1
problems with estAvgError.R
#613 opened Feb 3, 2024 by OthmanSN
1
Segmentation Fault
#612 opened Jan 29, 2024 by ciselkemahli
1
In version 0.934 how to convert haplo to tped? haploToPlink command no longer works
#611 opened Jan 16, 2024 by cls83cam
Getting allele frequencies for different populations cutting a beagle file or using a -sites file?
#610 opened Jan 4, 2024 by cleivama
ANGSD to calculate theta, is the result calculated log with 10 as the base or log with e as the base.
#609 opened Nov 29, 2023 by mxt2022202059
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