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WIP: better designed search.simlr
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stnava committed Aug 9, 2024
1 parent 786ca2c commit 339b225
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Showing 13 changed files with 125 additions and 584 deletions.
9 changes: 1 addition & 8 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -180,11 +180,8 @@ export(getNeighborhoodInMask)
export(getPixels)
export(getTemplateCoordinates)
export(getfMRInuisanceVariables)
export(grad_rel_orth_defect_norm)
export(gradient_invariant_orthogonality)
export(gradient_invariant_orthogonality_defect)
export(gradient_invariant_orthogonality_salad)
export(gradient_measure_orthogonality_norm)
export(hausdorffDistance)
export(hemodynamicRF)
export(hessianObjectness)
Expand Down Expand Up @@ -240,9 +237,6 @@ export(mask_values)
export(matrix2timeseries)
export(matrixToImages)
export(max)
export(measure_orthogonality)
export(measure_orthogonality_gradient)
export(measure_orthogonality_norm)
export(mergeChannels)
export(mergeListToNDImage)
export(mild)
Expand Down Expand Up @@ -277,7 +271,6 @@ export(preprocessRestingBOLD)
export(preprocessfMRI)
export(priorBasedSegmentation)
export(prod)
export(project_to_nonneg_orthogonal_alt)
export(quantifyCBF)
export(quantifySNPs)
export(randcca)
Expand All @@ -295,7 +288,6 @@ export(reflectionMatrix)
export(regressProjections)
export(regularizeSimlr)
export(reho)
export(rel_orth_defect_norm)
export(renormalizeProbabilityImages)
export(reorientImage)
export(resampleImage)
Expand All @@ -317,6 +309,7 @@ export(segmentationRefinement.train)
export(setAntsrTransformFixedParameters)
export(setAntsrTransformParameters)
export(simlr)
export(simlr.parameters)
export(simlr.perm)
export(simlr.search)
export(simlrU)
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