Feature: Add extra spark-submit options

The following `spark-submit` options are really useful for tweaking the
spark configuration/environment on a per-app/job basis:

- `--packages`
- `--exclude-packages`
- `--repositories`
- `--conf`
- `--properties-file`

The changes to the code that enable them are simply additional arguments
to the existing API/CLI and just pass them straight through to the spark
submit command generator. To make things consistent with the `spark-submit`
CLI, the corresponding arguments in AZTK maintain the same names.

aztk/node_scripts/scheduling/submit.py

@@ -33,8 +33,17 @@ def __app_submit_cmd(application):
     spark_submit_cmd.add_option("--name", application.name)
     spark_submit_cmd.add_option("--class", application.main_class)
     spark_submit_cmd.add_option("--jars", jars and ",".join(jars))
+    spark_submit_cmd.add_option("--packages", application.packages and
+                                '"{}"'.format(",".join(application.packages)))
+    spark_submit_cmd.add_option("--exclude-packages", application.exclude_packages and
+                                '"{}"'.format(",".join(application.exclude_packages)))
+    spark_submit_cmd.add_option("--repositories", application.repositories and
+                                '"{}"'.format(",".join(application.repositories)))
     spark_submit_cmd.add_option("--py-files", py_files and ",".join(py_files))
     spark_submit_cmd.add_option("--files", files and ",".join(files))
+    for key, val in application.conf.items():
+        spark_submit_cmd.add_option("--conf", '"{key}={val}"'.format(key=key, val=val))
+    spark_submit_cmd.add_option("--properties-file", application.properties_file)
     spark_submit_cmd.add_option("--driver-java-options", application.driver_java_options)
     spark_submit_cmd.add_option("--driver-library-path", application.driver_library_path)
     spark_submit_cmd.add_option("--driver-class-path", application.driver_class_path)

aztk/spark/models/models.py

@@ -125,8 +125,13 @@ def __init__(
             application_args=None,
             main_class=None,
             jars=None,
+            packages=None,
+            exclude_packages=None,
+            repositories=None,
             py_files=None,
             files=None,
+            conf=None,
+            properties_file=None,
             driver_java_options=None,
             driver_library_path=None,
             driver_class_path=None,
@@ -141,8 +146,13 @@ def __init__(
         self.application_args = application_args
         self.main_class = main_class
         self.jars = jars or []
+        self.packages = packages or []
+        self.exclude_packages = exclude_packages or []
+        self.repositories = repositories or []
         self.py_files = py_files or []
         self.files = files or []
+        self.conf = conf or {}
+        self.properties_file = properties_file
         self.driver_java_options = driver_java_options
         self.driver_library_path = driver_library_path
         self.driver_class_path = driver_class_path

aztk_cli/config.py

@@ -213,8 +213,13 @@ def _merge_dict(self, config):
                         application_args=application.get("application_args"),
                         main_class=application.get("main_class"),
                         jars=application.get("jars"),
+                        packages=application.get("packages"),
+                        extra_packages=application.get("extra_packages"),
+                        repositories=application.get("repositories"),
                         py_files=application.get("py_files"),
                         files=application.get("files"),
+                        conf=application.get("conf"),
+                        properties_file=application.get("properties_file"),
                         driver_java_options=application.get("driver_java_options"),
                         driver_library_path=application.get("driver_library_path"),
                         driver_class_path=application.get("driver_class_path"),

aztk_cli/config/job.yaml

@@ -40,10 +40,20 @@ job:
         main_class:
         jars:
           -
+        packages:
+          -
+        exclude_packages:
+          -
+        repositories:
+          -
         py_files:
           -
         files:
           -
+        conf: # extra spark config options
+          # key1: value1
+          # key2: value2
+        properties_file:
         driver_java_options:
         driver_library_path:
         driver_class_path:
@@ -59,10 +69,20 @@ job:
         main_class:
         jars:
           -
+        packages:
+          -
+        exclude_packages:
+          -
+        repositories:
+          -
         py_files:
           -
         files:
           -
+        conf: # extra spark config options
+          # key1: value1
+          # key2: value2
+        properties_file:
         driver_java_options:
         driver_library_path:
         driver_class_path:

aztk_cli/spark/endpoints/cluster/cluster_submit.py

@@ -7,6 +7,15 @@
 from aztk_cli import config, log, utils
 
 
+class AppendToDict(argparse.Action):
+    def __call__(self, parser, namespace, values, option_string=None):
+        key_vals = getattr(namespace, self.dest) or {}
+        for key_val_str in values.replace(" ", "").split(","):
+            key, val = key_val_str.split("=")
+            key_vals[key] = val
+        setattr(namespace, self.dest, key_vals)
+
+
 def setup_parser(parser: argparse.ArgumentParser):
     parser.add_argument("--id", dest="cluster_id", required=True, help="The unique id of your spark cluster")
 
@@ -25,6 +34,32 @@ def setup_parser(parser: argparse.ArgumentParser):
                               absolute path to reference files.",
     )
 
+    parser.add_argument(
+        "--packages",
+        help="Comma-separated list of maven coordinates of \
+                              jars to include on the driver and executor \
+                              classpaths. Will search the local maven repo, \
+                              then maven central and any additional remote \
+                              repositories given by --repositories. The \
+                              format for the coordinates should be \
+                              groupId:artifactId:version.",
+    )
+
+    parser.add_argument(
+        "--exclude-packages",
+        help="Comma-separated list of groupId:artifactId, to \
+                              exclude while resolving the dependencies \
+                              provided in --packages to avoid dependency \
+                              conflicts.",
+    )
+
+    parser.add_argument(
+        "--repositories",
+        help="Comma-separated list of additional remote \
+                              repositories to search for the maven \
+                              coordinates given with --packages.",
+    )
+
     parser.add_argument(
         "--py-files",
         help="Comma-separated list of .zip, .egg, or .py files \
@@ -39,6 +74,24 @@ def setup_parser(parser: argparse.ArgumentParser):
                               absolute path ot reference files.",
     )
 
+    parser.add_argument(
+        "--conf",
+        action=AppendToDict,
+        metavar='"PROP1=VAL1[,PROP2=VAL2...]"',
+        help='Arbitrary Spark configuration property(/-ies). \
+                              Multiple --conf options can be added, either \
+                              by using multiple --conf flags or by supplying \
+                              a comma-separated list. All "PROP=VAL,..." \
+                              arguments should be wrapped in double quotes.',
+    )
+
+    parser.add_argument(
+        "--properties-file",
+        help="Path to a file from which to load extra \
+                              properties. If not specified, this will look \
+                              for conf/spark-defaults.conf.",
+    )
+
     parser.add_argument("--driver-java-options", help="Extra Java options to pass to the driver.")
 
     parser.add_argument("--driver-library-path", help="Extra library path entries to pass to the driver.")
@@ -105,6 +158,9 @@ def execute(args: typing.NamedTuple):
 
     spark_client = aztk.spark.Client(config.load_aztk_secrets())
     jars = []
+    packages = []
+    exclude_packages = []
+    repositories = []
     py_files = []
     files = []
 
@@ -117,6 +173,15 @@ def execute(args: typing.NamedTuple):
     if args.files is not None:
         files = args.files.replace(" ", "").split(",")
 
+    if args.packages is not None:
+        packages = args.packages.replace(" ", "").split(",")
+
+    if args.exclude_packages is not None:
+        exclude_packages = args.exclude_packages.replace(" ", "").split(",")
+
+    if args.repositories is not None:
+        repositories = args.repositories.replace(" ", "").split(",")
+
     log_application(args, jars, py_files, files)
 
     spark_client.cluster.submit(
@@ -127,8 +192,13 @@ def execute(args: typing.NamedTuple):
             application_args=args.app_args,
             main_class=args.main_class,
             jars=jars,
+            packages=packages,
+            exclude_packages=exclude_packages,
+            repositories=repositories,
             py_files=py_files,
             files=files,
+            conf=args.conf,
+            properties_file=args.properties_file,
             driver_java_options=args.driver_java_options,
             driver_library_path=args.driver_library_path,
             driver_class_path=args.driver_class_path,

docs/70-jobs.md

@@ -20,10 +20,20 @@ Each Job has one or more applications given as a List in Job.yaml. Applications
       main_class:
       jars:
         -
+      packages:
+        -
+      exclude_packages:
+        -
+      repositories:
+        -
       py_files:
         -
       files:
         -
+      conf:
+        # key1: value1
+        # key2: value2
+      properties_file:
       driver_java_options:
         -
       driver_library_path: