v5.1.0

• Use new Python 3 version of shiver in conda
• Update Python and other conda environment components
• Run pipeline in conda environment and remove unnecessary references to CONDA_BIN

v5.0.2

• Use Snakemake cluster-status to catch memory and timeout errors
• Correct comment in decompress script

v5.0.1

Remove unused variables from Snakefile

v5.0.0

• Simplify wildcards in Snakefile
• Restructure temporary processing directories and simplify cleanup
• Update GitHub Actions versions
• Use png for rulegraph
• Update rulegraph

v4.0.3

Add QC descriptions document

v4.0.2

Add missing CONDA_BIN prefixes (picard, samtools); identified following Slurm update

v4.0.1

Remove SGE_ROOT references

v4.0.0

Use Slurm Workload Manager

v3.0.6

Add --rerun-triggers mtime to submit.sh

v3.0.5

Prevent failure when pangolin files empty