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...23_11_30__RecognizedCode-27-Background subtraction-08.flat_true.stitch_false.md
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...023_11_30__RecognizedCode-27-Background subtraction-08.flat_true.stitch_true.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,136 @@ | ||
| | Method | Parameters | Quick Start Reader | Original Reader | Delta | | ||
| | -------------------|------------------|--------------------|-----------------|------- | | ||
| | Initialization | |63 ms|72 ms| | | ||
| | Reader Size (Mb) | |9.13|9.89| | | ||
| | getImageCount|(No args)|8| 7| | | ||
| | getStageLabelName| Image 0 | ScanRegion0| Scene position #0| | | ||
| | getStageLabelX| Image 0 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getStageLabelY| Image 0 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getStageLabelZ| Image 0 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPixelsSizeX| Image 0 | 32751| 1504| | | ||
| | getPixelsSizeY| Image 0 | 20684| 2048| | | ||
| | getStageLabelName| Image 1 | ScanRegion0| Scene position #1| | | ||
| | getStageLabelX| Image 1 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getStageLabelY| Image 1 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getStageLabelZ| Image 1 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPixelsSizeX| Image 1 | 16375| 752| | | ||
| | getPixelsSizeY| Image 1 | 10342| 1024| | | ||
| | getPixelsPhysicalSizeX| Image 1 | 0.689 um | 0.344 um | 0.344 um | | ||
| | getPixelsPhysicalSizeY| Image 1 | 0.689 um | 0.344 um | 0.344 um | | ||
| | getStageLabelName| Image 2 | ScanRegion0| Scene position #2| | | ||
| | getStageLabelX| Image 2 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getStageLabelY| Image 2 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getStageLabelZ| Image 2 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPixelsSizeX| Image 2 | 8187| 376| | | ||
| | getPixelsSizeY| Image 2 | 5171| 512| | | ||
| | getPixelsPhysicalSizeX| Image 2 | 1.378 um | 0.344 um | 1.033 um | | ||
| | getPixelsPhysicalSizeY| Image 2 | 1.378 um | 0.344 um | 1.033 um | | ||
| | getStageLabelName| Image 3 | ScanRegion0| Scene position #3| | | ||
| | getStageLabelX| Image 3 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getStageLabelY| Image 3 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getStageLabelZ| Image 3 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPixelsSizeX| Image 3 | 4093| 188| | | ||
| | getPixelsSizeY| Image 3 | 2585| 256| | | ||
| | getPixelsPhysicalSizeX| Image 3 | 2.755 um | 0.344 um | 2.411 um | | ||
| | getPixelsPhysicalSizeY| Image 3 | 2.755 um | 0.344 um | 2.411 um | | ||
| | getStageLabelName| Image 4 | ScanRegion0| Scene position #4| | | ||
| | getStageLabelX| Image 4 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getStageLabelY| Image 4 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getStageLabelZ| Image 4 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPixelsSizeX| Image 4 | 2046| 94| | | ||
| | getPixelsSizeY| Image 4 | 1292| 128| | | ||
| | getPixelsPhysicalSizeX| Image 4 | 5.511 um | 0.344 um | 5.166 um | | ||
| | getPixelsPhysicalSizeY| Image 4 | 5.511 um | 0.344 um | 5.166 um | | ||
| | getImageName| Image 5 | 2023_11_30__RecognizedCode-27-Background subtraction-08.czi #6| label image| | | ||
| | getStageLabelName| Image 5 | error: false | error: true| | | ||
| | getStageLabelX| Image 5 | error: false | error: true| | | ||
| | getStageLabelY| Image 5 | error: false | error: true| | | ||
| | getStageLabelZ| Image 5 | error: false | error: true| | | ||
| | getPixelsSizeX| Image 5 | 1023| 1500| | | ||
| | getPixelsSizeY| Image 5 | 646| 723| | | ||
| | getPixelsSizeC| Image 5 | 1| 3| | | ||
| | getPixelsPhysicalSizeX| Image 5 | 11.022 um | 0.344 um | 10.677 um | | ||
| | getPixelsPhysicalSizeY| Image 5 | 11.022 um | 0.344 um | 10.677 um | | ||
| | getPixelsInterleaved| Image 5 | false| true| | | ||
| | getImageName| Image 6 | label image| macro image| | | ||
| | getImageAcquisitionDate| Image 6 | 1: null| 2: 2023-12-04T22:40:00.716 | | ||
| | getPixelsPhysicalSizeX| Image 6 | 1: null| 2: ome.units.quantity.Length: value[0.3444225755520869], unit[µm] stored as java.lang.Double | | ||
| | getPixelsPhysicalSizeY| Image 6 | 1: null| 2: ome.units.quantity.Length: value[0.3444225755520869], unit[µm] stored as java.lang.Double | | ||
| | getImageName| Image 7 | error: false | error: true| | | ||
| | getImageAcquisitionDate| Image 7 | error: false | error: true| | | ||
| | getImageAnnotationRefCount| Image 7 | error: false | error: true| | | ||
| | getImageDescription| Image 7 | error: false | error: true| | | ||
| | getImageExperimenterRef| Image 7 | error: false | error: true| | | ||
| | getImageInstrumentRef| Image 7 | error: false | error: true| | | ||
| | getImageID| Image 7 | error: false | error: true| | | ||
| | getImageROIRefCount| Image 7 | error: false | error: true| | | ||
| | getPlaneCount| Image 7 | error: false | error: true| | | ||
| | getChannelCount| Image 7 | error: false | error: true| | | ||
| | getImageROIRefCount| Image 7 | error: false | error: true| | | ||
| | getPixelsBinDataCount| Image 7 | error: false | error: true| | | ||
| | getMicrobeamManipulationRefCount| Image 7 | error: false | error: true| | | ||
| | getTiffDataCount| Image 7 | error: false | error: true| | | ||
| | getPixelsSizeX| Image 7 | error: false | error: true| | | ||
| | getPixelsSizeY| Image 7 | error: false | error: true| | | ||
| | getPixelsSizeZ| Image 7 | error: false | error: true| | | ||
| | getPixelsSizeC| Image 7 | error: false | error: true| | | ||
| | getPixelsSizeT| Image 7 | error: false | error: true| | | ||
| | getPixelsPhysicalSizeX| Image 7 | error: false | error: true| | | ||
| | getPixelsPhysicalSizeY| Image 7 | error: false | error: true| | | ||
| | getPixelsPhysicalSizeZ| Image 7 | error: false | error: true| | | ||
| | getPixelsInterleaved| Image 7 | error: false | error: true| | | ||
| | getPixelsDimensionOrder| Image 7 | error: false | error: true| | | ||
| | getPixelsBigEndian| Image 7 | error: false | error: true| | | ||
| | getPixelsID| Image 7 | error: false | error: true| | | ||
| | getPlanePositionX| Image 0 Plane 0 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getPlanePositionY| Image 0 Plane 0 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getPlanePositionZ| Image 0 Plane 0 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPlanePositionX| Image 1 Plane 0 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getPlanePositionY| Image 1 Plane 0 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getPlanePositionZ| Image 1 Plane 0 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPlanePositionX| Image 2 Plane 0 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getPlanePositionY| Image 2 Plane 0 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getPlanePositionZ| Image 2 Plane 0 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPlanePositionX| Image 3 Plane 0 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getPlanePositionY| Image 3 Plane 0 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getPlanePositionZ| Image 3 Plane 0 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPlanePositionX| Image 4 Plane 0 | -35639.195 um | -30277.775 um | 5361.420 um | | ||
| | getPlanePositionY| Image 4 Plane 0 | 7270.829 um | 10510.124 um | 3239.294 um | | ||
| | getPlanePositionZ| Image 4 Plane 0 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPlaneDeltaT| Image 5 Plane 0 | 1: ome.units.quantity.Time: value[2.06499981880188], unit[s] stored as java.lang.Double| 2: null | | ||
| | getPlaneExposureTime| Image 5 Plane 0 | 1: ome.units.quantity.Time: value[2.253], unit[s] stored as java.lang.Double| 2: null | | ||
| | getPlanePositionX| Image 5 Plane 0 | 1: ome.units.quantity.Length: value[-35639.1953], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPlanePositionY| Image 5 Plane 0 | 1: ome.units.quantity.Length: value[7270.829433220655], unit[µm] stored as java.lang.Double| 2: null | | ||
| | getPlanePositionZ| Image 5 Plane 0 | 1: ome.units.quantity.Length: value[4012.1892], unit[µm] stored as java.lang.Double| 2: null | | ||
| | Different plane count found for image 7 error: false | error: true| | | ||
| | getChannelAcquisitionMode| Image 5 Channel 0 | 1: WideField| 2: null | | ||
| | getChannelColor| Image 5 Channel 0 | 1: 16735231| 2: null | | ||
| | getChannelFluor| Image 5 Channel 0 | 1: EGFP| 2: null | | ||
| | getChannelExcitationWavelength| Image 5 Channel 0 | 1: ome.units.quantity.Length: value[488.0], unit[nm] stored as java.lang.Double| 2: null | | ||
| | getChannelEmissionWavelength| Image 5 Channel 0 | 1: ome.units.quantity.Length: value[509.0], unit[nm] stored as java.lang.Double| 2: null | | ||
| | getChannelIlluminationType| Image 5 Channel 0 | 1: Epifluorescence| 2: null | | ||
| | getChannelFilterSetRef| Image 5 Channel 0 | error: false | error: true| | | ||
| | getChannelName| Image 5 Channel 0 | 1: EGFP| 2: null | | ||
| | getChannelSamplesPerPixel| Image 5 Channel 0 | 1| 3| | | ||
| | Different channel count found for image 7 error: false | error: true| | | ||
| # [2023_11_30__RecognizedCode-27-Background subtraction-08.czi](https://zenodo.org/records/10577186/files/2023_11_30__RecognizedCode-27-Background%20subtraction-08.czi) report | ||
| - **Autostitch** = true | ||
| - ZeissCZIReader v7.1.0 | ||
| - ZeissQuickStartCZIReader v0.2.4-SNAPSHOT | ||
|
|
||
| # Images | ||
|
|
||
| | Series | Quick Start Reader | Size | Original Reader | Size | #Diffs | | ||
| |-------------------|--------------------|------|-----------------|------|--------| | ||
| | Read time (all) |16360 ms|------|5799 ms|------|--------| | ||
| |0||X:32751<br>Y:20684<br>C:1<br>Z:1<br>T:1||X:1504<br>Y:2048<br>C:1<br>Z:1<br>T:1|16499| | ||
| |1||X:16375<br>Y:10342<br>C:1<br>Z:1<br>T:1||X:752<br>Y:1024<br>C:1<br>Z:1<br>T:1|16500| | ||
| |2||X:8187<br>Y:5171<br>C:1<br>Z:1<br>T:1||X:376<br>Y:512<br>C:1<br>Z:1<br>T:1|16499| | ||
| |3||X:4093<br>Y:2585<br>C:1<br>Z:1<br>T:1||X:188<br>Y:256<br>C:1<br>Z:1<br>T:1|16496| | ||
| |4||X:2046<br>Y:1292<br>C:1<br>Z:1<br>T:1||X:94<br>Y:128<br>C:1<br>Z:1<br>T:1|16478| | ||
| |5||X:1023<br>Y:646<br>C:1<br>Z:1<br>T:1||X:1500<br>Y:723<br>C:3<br>Z:1<br>T:1|35549| | ||
| |6||X:542<br>Y:665<br>C:3<br>Z:1<br>T:1||X:542<br>Y:665<br>C:3<br>Z:1<br>T:1|0| | ||
| |7||X:1500<br>Y:723<br>C:3<br>Z:1<br>T:1| | |-1| | ||
|
|
||
| # Metadata | ||
|
|
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