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Introduce Topology to check biomass graph disconnections. #152

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Introduce Topology to check biomass graph disconnections. #152

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Commits on Aug 2, 2024

  1. Retrieve original model value from solution.

    @iago-lito
    iago-lito committed Aug 2, 2024
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  2. Minor fixes to basic output analyses functions.

    @iago-lito
    iago-lito committed Aug 2, 2024
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  3. Update Manifest.toml to reproduce exact extinction dates. 

    DifferentialEquations seems to have changed its default solver,
which made extinction dates non-reproducible?
    @iago-lito
    iago-lito committed Aug 2, 2024
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  4. Explicit model argument type by @expose_data.

    @iago-lito
    iago-lito committed Aug 2, 2024
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  5. Fix test macro hygiene.

    @iago-lito
    iago-lito committed Aug 2, 2024
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  6. Introduce Topology values to address #151. 

    These values describe the model under a topological perspective:
nodes and their neibouhring relations.
Nodes and edges are typed into various 'compartments'.
Nodes can be "removed" from topologies
while leaving tombstones to maintain indices validity.
This enables various topological analyses of the model network
like `disconnected_components()`,
`isolated_producers()` or `starving_consumers()`.
    @iago-lito
    iago-lito committed Aug 2, 2024
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