Skip to content

Issues: BioGenies/tidysq

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

50 Open 37 Closed
50 Open 37 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

I would like to add x numer of N between concatenated sequences with collapse enhancement We don't do that here... yet
#98 opened Jul 5, 2023 by ericgonzalezs
2
How do you bite rowwise? discussion Development direction idea to quarrel over
#97 opened Mar 31, 2023 by m3hdad
2
Add better check for file existence enhancement We don't do that here... yet
#91 opened Dec 15, 2021 by ErdaradunGaztea
R session crashes when searching for "^" or "$" motif bug Something isn't working
#90 opened Sep 21, 2021 by DominikRafacz
Interpret [A, C, T, G, N] as dna_ext bug Something isn't working refactor Because we have too much free time
#89 opened Jul 14, 2021 by ErdaradunGaztea
add more test for options with usage of withr
#87 opened Apr 1, 2021 by DominikRafacz
AMP case study
#86 opened Mar 8, 2021 by michbur
Refactor specific types of integers (like LenSq) on C++ side C++ adventures We thought we know how this language works... but sometimes...
#85 opened Mar 5, 2021 by DominikRafacz
Add more convenience parameters to sqapply (like simplify) enhancement We don't do that here... yet
#84 opened Feb 28, 2021 by DominikRafacz
Formalize sqibble discussion Development direction idea to quarrel over enhancement We don't do that here... yet refactor Because we have too much free time
#83 opened Feb 28, 2021 by DominikRafacz
@michbur
2
Implement has_X as an analogue to remove_X enhancement We don't do that here... yet
#82 opened Feb 27, 2021 by ErdaradunGaztea
Optimize find_motifs() using some specialized string-searching algorythm performance Maybe we can do it harder, better, faster, stronger?
#81 opened Feb 8, 2021 by ErdaradunGaztea
Cannot use dplyr::group_by with sq objects bug Something isn't working
#80 opened Feb 5, 2021 by ErdaradunGaztea
Implement replace_motifs() enhancement We don't do that here... yet
#79 opened Feb 3, 2021 by ErdaradunGaztea
Include bioseq in comparisons documentation Improvements or additions to documentation
#78 opened Feb 3, 2021 by ErdaradunGaztea
Create changelog documentation Improvements or additions to documentation
#77 opened Jan 25, 2021 by ErdaradunGaztea
Prettify tidysq options printing refactor Because we have too much free time
#76 opened Jan 23, 2021 by ErdaradunGaztea
Implement exporting sq objects (or sqibbles) to LaTeX tables enhancement We don't do that here... yet
#75 opened Jan 23, 2021 by ErdaradunGaztea
Hide LetterTree, LetterNode and Motif classes from the public C++ adventures We thought we know how this language works... but sometimes... enhancement We don't do that here... yet
#74 opened Dec 30, 2020 by ErdaradunGaztea
Implement duplicated.sq() enhancement We don't do that here... yet
#73 opened Dec 20, 2020 by ErdaradunGaztea
Find out if adding all possible LetterValues to value_to_letter map in alphabet results in better performance than using conditional performance Maybe we can do it harder, better, faster, stronger?
#71 opened Dec 17, 2020 by DominikRafacz
Rethink the idea of unpacking NA values in string vectors discussion Development direction idea to quarrel over
#69 opened Dec 17, 2020 by DominikRafacz
Add comparison and casting betwenn STD_IT and RCPP_IT objects enhancement We don't do that here... yet
#67 opened Dec 17, 2020 by DominikRafacz
Use template functions for packing and unpacking instead of explicitly specyfying bit shifts C++ adventures We thought we know how this language works... but sometimes... refactor Because we have too much free time
#66 opened Dec 17, 2020 by DominikRafacz
Handle case of codon tables with nontranslatable codons enhancement We don't do that here... yet
#62 opened Dec 11, 2020 by DominikRafacz
ProTip! Exclude everything labeled bug with -label:bug.