pkg rename, removed build info for conda yml

BoevaLab · Aug 8, 2023 · d71a29c · d71a29c
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diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
-# survhive
+# sparsesurv
 A toolbox for high-dimensional survival analysis.
 
 ## Installation
@@ -12,7 +12,7 @@ conda env create -f conda.yml
 Activate the environment:
 
 ```console
-conda activate survhive
+conda activate sparsesurv
 ```
 
 Install:

diff --git a/conda.yml b/conda.yml
@@ -3,78 +3,176 @@ channels:
   - defaults
   - conda-forge
 dependencies:
-  - alabaster=0.7.12=pyhd3eb1b0_0
-  - arrow=1.2.3=pyhd8ed1ab_0
-  - babel=2.10.3=pyhd8ed1ab_0
-  - binaryornot=0.4.4=pyhd3eb1b0_1
-  - brotlipy=0.7.0=py39h9ed2024_1003
-  - ca-certificates=2022.9.24=h033912b_0
-  - certifi=2022.9.24=pyhd8ed1ab_0
-  - cffi=1.15.1=py39hc55c11b_0
-  - chardet=5.0.0=py39h6e9494a_0
-  - charset-normalizer=2.1.1=pyhd8ed1ab_0
-  - click=8.1.3=py39h6e9494a_0
-  - colorama=0.4.5=py39hecd8cb5_0
-  - cookiecutter=2.1.1=pyh6c4a22f_0
-  - cryptography=37.0.1=py39hf6deb26_0
-  - docutils=0.19=py39h6e9494a_0
-  - idna=3.4=py39hecd8cb5_0
-  - imagesize=1.4.1=py39hecd8cb5_0
-  - importlib-metadata=4.11.4=py39h6e9494a_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - jinja2-time=0.2.0=pyhd3eb1b0_3
-  - joblib=1.2.0=pyhd8ed1ab_0
-  - libblas=3.9.0=16_osx64_openblas
-  - libcblas=3.9.0=16_osx64_openblas
-  - libcxx=14.0.6=h9765a3e_0
-  - libffi=3.3=hb1e8313_2
-  - libgfortran=5.0.0=11_3_0_hecd8cb5_28
-  - libgfortran5=11.3.0=h9dfd629_28
-  - liblapack=3.9.0=16_osx64_openblas
-  - libopenblas=0.3.21=h54e7dc3_0
-  - llvm-openmp=14.0.6=h0dcd299_0
-  - markupsafe=2.1.1=py39hca72f7f_0
-  - ncurses=6.3=hca72f7f_3
-  - numpy=1.23.4=py39hdfa1d0c_0
-  - openssl=1.1.1q=hfd90126_1
-  - packaging=21.3=pyhd3eb1b0_0
-  - pandas=1.5.1=py39hecff1ad_0
-  - pip=22.2.2=py39hecd8cb5_0
-  - pycparser=2.21=pyhd3eb1b0_0
-  - pygments=2.13.0=pyhd8ed1ab_0
-  - pyopenssl=22.0.0=pyhd3eb1b0_0
-  - pyparsing=3.0.9=py39hecd8cb5_0
-  - pysocks=1.7.1=py39hecd8cb5_0
-  - python=3.9.13=hdfd78df_2
-  - python-dateutil=2.8.2=pyhd3eb1b0_0
-  - python-slugify=6.1.2=pyhd8ed1ab_0
-  - python_abi=3.9=2_cp39
-  - pytz=2022.5=pyhd8ed1ab_0
-  - pyyaml=6.0=py39hca72f7f_1
-  - readline=8.1.2=hca72f7f_1
-  - requests=2.28.1=py39hecd8cb5_0
-  - scikit-learn=1.1.2=py39he9d5cce_0
-  - scipy=1.9.3=py39h8a15683_0
-  - setuptools=63.4.1=py39hecd8cb5_0
-  - six=1.16.0=pyhd3eb1b0_1
-  - snowballstemmer=2.2.0=pyhd3eb1b0_0
-  - sphinx=5.3.0=pyhd8ed1ab_0
-  - sphinxcontrib-applehelp=1.0.2=pyhd3eb1b0_0
-  - sphinxcontrib-devhelp=1.0.2=pyhd3eb1b0_0
-  - sphinxcontrib-htmlhelp=2.0.0=pyhd3eb1b0_0
-  - sphinxcontrib-jsmath=1.0.1=pyhd3eb1b0_0
-  - sphinxcontrib-qthelp=1.0.3=pyhd3eb1b0_0
-  - sphinxcontrib-serializinghtml=1.1.5=pyhd3eb1b0_0
-  - sqlite=3.39.3=h707629a_0
-  - text-unidecode=1.3=pyhd3eb1b0_0
-  - threadpoolctl=3.1.0=pyh8a188c0_0
-  - tk=8.6.12=h5d9f67b_0
-  - typing_extensions=4.3.0=py39hecd8cb5_0
-  - tzdata=2022e=h04d1e81_0
-  - unidecode=1.2.0=pyhd3eb1b0_0
-  - urllib3=1.26.12=py39hecd8cb5_0
-  - wheel=0.37.1=pyhd3eb1b0_0
-  - xz=5.2.6=hca72f7f_0
-  - yaml=0.2.5=haf1e3a3_0
-  - zipp=3.9.0=pyhd8ed1ab_0
-  - zlib=1.2.12=h4dc903c_3
+  - alabaster=0.7.12
+  - appnope=0.1.2
+  - arrow=1.2.3
+  - asttokens=2.0.5
+  - babel=2.10.3
+  - backcall=0.2.0
+  - binaryornot=0.4.4
+  - black=22.6.0
+  - brotlipy=0.7.0
+  - ca-certificates=2023.05.30
+  - certifi=2023.7.22
+  - cffi=1.15.1
+  - chardet=5.0.0
+  - charset-normalizer=2.1.1
+  - click=8.1.3
+  - cookiecutter=2.1.1
+  - cryptography=41.0.2
+  - debugpy=1.6.7
+  - decorator=5.1.1
+  - entrypoints=0.4
+  - executing=0.8.3
+  - filelock=3.9.0
+  - freetype=2.12.1
+  - giflib=5.2.1
+  - gmp=6.2.1
+  - gmpy2=2.1.2
+  - idna=3.4
+  - imagesize=1.4.1
+  - importlib-metadata=4.11.4
+  - ipykernel=6.15.0
+  - ipython=8.12.0
+  - jedi=0.18.1
+  - jinja2=3.1.2
+  - jinja2-time=0.2.0
+  - joblib=1.2.0
+  - jpeg=9e
+  - jupyter_client=7.4.9
+  - jupyter_core=5.3.0
+  - lcms2=2.12
+  - lerc=3.0
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libcxx=14.0.6
+  - libdeflate=1.17
+  - libffi=3.4.4
+  - libgfortran=5.0.0
+  - libgfortran5=11.3.0
+  - liblapack=3.9.0
+  - libopenblas=0.3.21
+  - libpng=1.6.39
+  - libprotobuf=3.21.12
+  - libsodium=1.0.18
+  - libtiff=4.5.0
+  - libwebp=1.2.4
+  - libwebp-base=1.2.4
+  - libzlib=1.2.13
+  - llvm-openmp=14.0.6
+  - lz4-c=1.9.4
+  - markupsafe=2.1.1
+  - matplotlib-inline=0.1.6
+  - mkl=2022.2.1
+  - mpc=1.1.0
+  - mpfr=4.0.2
+  - mpmath=1.3.0
+  - mypy_extensions=0.4.3
+  - ncurses=6.4
+  - nest-asyncio=1.5.6
+  - networkx=3.1
+  - numpy=1.23.4
+  - openssl=3.0.10
+  - packaging=21.3
+  - pandas=1.5.1
+  - parso=0.8.3
+  - pathspec=0.10.3
+  - pexpect=4.8.0
+  - pickleshare=0.7.5
+  - pip=23.2.1
+  - platformdirs=2.5.2
+  - prompt-toolkit=3.0.36
+  - psutil=5.9.0
+  - ptyprocess=0.7.0
+  - pure_eval=0.2.2
+  - pycparser=2.21
+  - pygments=2.13.0
+  - pyopenssl=23.2.0
+  - pyparsing=3.0.9
+  - pysocks=1.7.1
+  - python=3.9.17
+  - python-dateutil=2.8.2
+  - python-slugify=6.1.2
+  - python_abi=3.9
+  - pytorch=2.0.0
+  - pytz=2022.5
+  - pyyaml=6.0
+  - pyzmq=25.1.0
+  - readline=8.2
+  - requests=2.28.1
+  - scipy=1.9.3
+  - setuptools=68.0.0
+  - six=1.16.0
+  - sleef=3.5.1
+  - snowballstemmer=2.2.0
+  - sphinxcontrib-applehelp=1.0.2
+  - sphinxcontrib-devhelp=1.0.2
+  - sphinxcontrib-htmlhelp=2.0.0
+  - sphinxcontrib-jsmath=1.0.1
+  - sphinxcontrib-qthelp=1.0.3
+  - sphinxcontrib-serializinghtml=1.1.5
+  - sqlite=3.41.2
+  - stack_data=0.2.0
+  - sympy=1.11.1
+  - tbb=2021.8.0
+  - text-unidecode=1.3
+  - threadpoolctl=3.1.0
+  - tk=8.6.12
+  - tomli=2.0.1
+  - torchvision=0.13.1
+  - tornado=6.3.2
+  - traitlets=5.7.1
+  - typing_extensions=4.7.1
+  - tzdata=2023c
+  - unidecode=1.2.0
+  - urllib3=1.26.12
+  - wcwidth=0.2.5
+  - wheel=0.38.4
+  - xz=5.4.2
+  - yaml=0.2.5
+  - zeromq=4.3.4
+  - zipp=3.9.0
+  - zlib=1.2.13
+  - zstd=1.5.5
+  - pip:
+    - better-apidoc==0.3.2
+    - celer==0.7.2
+    - contourpy==1.0.7
+    - copt==0.8.4
+    - coverage==7.2.4
+    - cycler==0.11.0
+    - cython==0.29.33
+    - docutils==0.18.1
+    - download==0.3.5
+    - ecos==2.0.12
+    - exceptiongroup==1.1.1
+    - fonttools==4.39.1
+    - importlib-resources==5.12.0
+    - iniconfig==2.0.0
+    - kiwisolver==1.4.4
+    - libsvmdata==0.4.1
+    - llvmlite==0.39.1
+    - markdown-it-py==2.2.0
+    - matplotlib==3.7.1
+    - mdit-py-plugins==0.3.5
+    - mdurl==0.1.2
+    - myst-parser==1.0.0
+    - numba==0.56.4
+    - numexpr==2.8.4
+    - osqp==0.6.2.post8
+    - pillow==9.4.0
+    - pluggy==1.0.0
+    - pytest==7.3.1
+    - qdldl==0.1.5.post3
+    - scikit-learn==1.2.1
+    - scikit-survival==0.20.0
+    - seaborn==0.12.2
+    - sklearn==0.0.post1
+    - sphinx==6.2.1
+    - sphinx-autodoc-typehints==1.23.0
+    - sphinx-rtd-theme==1.2.0
+    - sphinxcontrib-jquery==4.1
+    - survhive==0.1
+    - tqdm==4.65.0
+    - typeguard==2.13.3
+    - xarray==2023.2.0
diff --git a/setup.py b/setup.py
@@ -40,18 +40,17 @@ def read_version(filepath: str) -> str:
 
 # TODO: Update these values according to the name of the module.
 setup(
-    name="survhive",
+    name="sparsesurv",
     version=read_version("survhive/__init__.py"),  # single place for version
     description="Installable survhive package. Modify as needed.",
     long_description=open("README.md").read(),
     url="https://github.com/BoevaLab/survhive",
-    author="Nikita Janakarajan, David Wissel",
-    author_email="[email protected]",
+    author="David Wissel, Nikita Janakarajan",
+    author_email="[email protected], [email protected]",
     # the following exclusion is to prevent shipping of tests.
     # if you do include them, add pytest to the required packages.
     packages=find_packages(".", exclude=["*tests*"]),
-    package_data={"survhive": ["py.typed"]},
-
+    package_data={"sparsesurv": ["py.typed"]},
     extras_require={
         "vcs": VCS_REQUIREMENTS,
         "test": ["pytest", "pytest-cov"],
@@ -79,4 +78,3 @@ def read_version(filepath: str) -> str:
         "click",
     ],
 )
-