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Brent Lab

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  1. NetProphet_2.0 NetProphet_2.0 Public

    A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.

    R 12 5

  2. Dual_Threshold_Optimization Dual_Threshold_Optimization Public

    Dual threshold optimization for identifying convergent evidence: TF binding locations and TF perturbation responses.

    Python 3 1

  3. TFA-evaluation TFA-evaluation Public

    Python 2 1

  4. TFPertRespExplainer TFPertRespExplainer Public

    Predict genes' response to perturbations and explains which genomic factors determine the response predictions.

    Jupyter Notebook 2 1

  5. NetProphet_3.0 NetProphet_3.0 Public

    R 2 1

  6. Twinscan Twinscan Public

    Twinscan is a suite of software for gene-structure prediction. Twinscan is currently available for Mammals, Caenorhabditis (worm), Dicot plants, and Cryptococci.

    C 2

Repositories

Showing 10 of 21 repositories
  • yeastdnnexplorer Public

    A development environment to explore implementations of deep neural networks for predicting the relationship between transcription factor and target genes using binding and perturbation data

    BrentLab/yeastdnnexplorer’s past year of commit activity
    Python 0 3 12 7 Updated Nov 15, 2024
  • NET-evaluation Public

    network evaluation package

    BrentLab/NET-evaluation’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Sep 15, 2024
  • yeastCCDBShiny Public

    Shiny front end to yeastCallingCardsDB

    BrentLab/yeastCCDBShiny’s past year of commit activity
    R 0 0 13 0 Updated Jun 21, 2024
  • callvariants Public

    A variant calling workflow suitable for both checking genotypes and processing data for BSA experiments

    BrentLab/callvariants’s past year of commit activity
    Nextflow 0 MIT 0 4 0 Updated Jun 6, 2024
  • GOeval Public

    Gene Regulatory Network Evaluation Using Gene Ontology

    BrentLab/GOeval’s past year of commit activity
    R 1 0 3 0 Updated May 29, 2024
  • trace_recalling Public

    Trace Recalling is a novel method for deconvoluting double traces that result from simultaneously sequencing two DNA templates. Trace Recalling identifies up to two bases at each position of such a trace.

    BrentLab/trace_recalling’s past year of commit activity
    Perl 0 GPL-3.0 0 0 0 Updated Mar 4, 2024
  • YeastCallingCardsDB Public

    A Django managed shiny app for storing and visualizing Yeast Calling Cards data

    BrentLab/YeastCallingCardsDB’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Nov 23, 2023
  • rnaseq_databases_documentation Public

    Documentation for all organisms with active databases

    BrentLab/rnaseq_databases_documentation’s past year of commit activity
    0 MIT 0 1 0 Updated Aug 15, 2023
  • brentlabRnaSeqTools Public
    BrentLab/brentlabRnaSeqTools’s past year of commit activity
    R 0 1 2 0 Updated Aug 8, 2023
  • iscan Public
    BrentLab/iscan’s past year of commit activity
    C 0 MIT 0 0 0 Updated Jun 23, 2023
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