Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

chore(main): release 0.1.0 #143

Merged
merged 1 commit into from
Feb 1, 2023
Merged

chore(main): release 0.1.0 #143

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
32 changes: 32 additions & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,32 @@
# Changelog

## [0.1.0](https://github.com/CAST-genomics/haptools/compare/v0.0.3...v0.1.0) (2023-01-31)


### Features

* a new `--no-normalize` parameter for `simphenotype` ([#156](https://github.com/CAST-genomics/haptools/issues/156)) ([24a0867](https://github.com/CAST-genomics/haptools/commit/24a0867ee8c4b1f495f5dde43600758daa2d916d))
* add `--seed` to `simphenotype` ([#162](https://github.com/CAST-genomics/haptools/issues/162)) ([9f7890a](https://github.com/CAST-genomics/haptools/commit/9f7890a6efd5be90717aaeeeab1f638512c6e2c4))
* change default verbosity to INFO ([#157](https://github.com/CAST-genomics/haptools/issues/157)) ([18ff090](https://github.com/CAST-genomics/haptools/commit/18ff090b431891b16b4aae9d297983d481a3d248))
* github actions for publishing ([#141](https://github.com/CAST-genomics/haptools/issues/141)) ([5cf6f29](https://github.com/CAST-genomics/haptools/commit/5cf6f29b64a49f9405ab78eebab5e0de20963376))
* Significantly decreased runtime of simgenotype ([#163](https://github.com/CAST-genomics/haptools/issues/163)) ([de011d0](https://github.com/CAST-genomics/haptools/commit/de011d0106a4b50e0ea1e38eff6c567174a3a72f))
* updated `.vcf.gz` output in simgenotype ([#150](https://github.com/CAST-genomics/haptools/issues/150)) ([f61f613](https://github.com/CAST-genomics/haptools/commit/f61f613c55638efb610fb9ca03b0292f42dc2623))
* Updated simgenotype to allow only breakpoint generation ([#167](https://github.com/CAST-genomics/haptools/issues/167)) ([c0c3c97](https://github.com/CAST-genomics/haptools/commit/c0c3c97384c94056f79786f5297251bf9c29f2b9))


### Bug Fixes

* Added an additional test file containing only autosome centromeres ([#168](https://github.com/CAST-genomics/haptools/issues/168)) ([ca220e7](https://github.com/CAST-genomics/haptools/commit/ca220e7319f4b4d6594bad0042a9eb35c2a2d607))
* Added utilization of logging class to karyogram and simgenotype ([#159](https://github.com/CAST-genomics/haptools/issues/159)) ([bcf778a](https://github.com/CAST-genomics/haptools/commit/bcf778a1180d6208c7f24a6f63af1df830734dc5))
* case where genotypes are all the same but heritability is specified in `simphenotype` ([#145](https://github.com/CAST-genomics/haptools/issues/145)) ([063b411](https://github.com/CAST-genomics/haptools/commit/063b411302e4f299f02de82ad4040d2eb3fa8a61))
* Fixed logic error in simgenotype and docs errors ([#172](https://github.com/CAST-genomics/haptools/issues/172)) ([18dd27f](https://github.com/CAST-genomics/haptools/commit/18dd27fbe45c4af0081aa36928796cd61e30041e))
* issue where breakpoints weren't outputting ([#144](https://github.com/CAST-genomics/haptools/issues/144)) ([ff90bff](https://github.com/CAST-genomics/haptools/commit/ff90bff662b5b3ebc98278cf64d4919fbe4699c5))
* logging so that it doesn't affect the root logger ([#154](https://github.com/CAST-genomics/haptools/issues/154)) ([c1dc1ef](https://github.com/CAST-genomics/haptools/commit/c1dc1efed132f365c9268978be37bf25b4ef10b5))
* pin numpy to ensure a recent version of numpy ([#151](https://github.com/CAST-genomics/haptools/issues/151)) ([7c84a45](https://github.com/CAST-genomics/haptools/commit/7c84a454dfe3b57e559a3f4439b1f2dc390700d0))
* Update maps.rst ([#170](https://github.com/CAST-genomics/haptools/issues/170)) ([8ace893](https://github.com/CAST-genomics/haptools/commit/8ace8933644e98eda9483d47f4a895fe8cdd7831))


### Documentation

* better showcase example files and their locations in `simgenotype` ([#166](https://github.com/CAST-genomics/haptools/issues/166)) ([6995407](https://github.com/CAST-genomics/haptools/commit/69954075e547917882f72ca70776169254d16b99))
* updates for v0.1.0 ([#171](https://github.com/CAST-genomics/haptools/issues/171)) ([714142f](https://github.com/CAST-genomics/haptools/commit/714142f06204b284571f5b01c8a2bed3892dada7))
2 changes: 1 addition & 1 deletion pyproject.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
[tool.poetry]
name = "haptools"
version = "0.0.3"
version = "0.1.0"
description = "Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis"
authors = ["Arya Massarat", "Michael Lamkin"]
license = "MIT"
Expand Down