Merge pull request #46 from CCBR/dev

merge increases to resources; update workflow img, contributions

.gitignore

@@ -6,6 +6,8 @@ site/
 **/*.swp
 **/test.*
 
+*/._*
+*/*/._*
 *DS_Store
 *RData
 *Rhistory

README.md

@@ -1,6 +1,11 @@
-![Issues](https://img.shields.io/github/issues/CCBR/CARLISLE)
+# Cut And Run anaLysIS pipeLinE [CARLISLE]
 
-# Cut And Run anaLysIS pipeLinE or CARLISLE
+<div align="center">
+  <img src="resources/img/CUTandRUN_Workflow.jpeg" width="85%" height="85%">
+
+  [![GitHub releases](https://img.shields.io/github/release/CCBR/CARLISLE)](https://github.com/CCBR/CARLISLE/releases)  [![GitHub issues](https://img.shields.io/github/issues/CCBR/CARLISLE)](https://github.com/CCBR/CARLISLE/issues) [![GitHub license](https://img.shields.io/github/license/CCBR/CARLISLE)](https://github.com/CCBR/CARLISLE/blob/master/LICENSE)  
+
+</div>
 
 This snakemake pipeline is built to run on [Biowulf](https://hpc.nih.gov/).
 

docs/index.md

@@ -1 +1,3 @@
-The CARLISLE pipeline was developed in support of NIH [Dr Vassiliki Saloura's Laboratory](https://ccr.cancer.gov/staff-directory/vassiliki-saloura). It has been developed and tested solely on NIH [HPC Biowulf](https://hpc.nih.gov/).
+The CARLISLE pipeline was developed in support of NIH [Dr Vassiliki Saloura's Laboratory](https://ccr.cancer.gov/staff-directory/vassiliki-saloura) and [Dr Javed Khan's Laboratory](https://ccr.cancer.gov/staff-directory/javed-khan/lab). It has been developed and tested solely on NIH [HPC Biowulf](https://hpc.nih.gov/).
+
+![Image title](https://github.com/CCBR/CARLISLE/blob/dev/resources/img/CUTandRUN_Workflow.jpeg?raw=true)

resources/cluster.yaml

@@ -47,7 +47,7 @@ findMotif:
     threads: 6
 ###################################################################
 rose:
-    mem: 10g
+    mem: 32g
     threads: 2
     time: 00-06:00:00
 ###################################################################