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Merge pull request #111 from CCBR/citation-update
Citation updates
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|---|---|---|
| @@ -0,0 +1,48 @@ | ||
| default_install_hook_types: [pre-commit, commit-msg] | ||
| default_stages: [pre-commit] | ||
| exclude: | | ||
| (?x)( | ||
| ^assets/| | ||
| ^docs/.*.html| | ||
| ^_extensions/ | ||
| ) | ||
| repos: | ||
| - repo: https://github.com/pre-commit/pre-commit-hooks | ||
| rev: v1.2.3 | ||
| hooks: | ||
| - id: check-added-large-files | ||
| - id: end-of-file-fixer | ||
| - id: trailing-whitespace | ||
| - id: check-json | ||
| # spell check | ||
| - repo: https://github.com/codespell-project/codespell | ||
| rev: v2.2.4 | ||
| hooks: | ||
| - id: codespell | ||
| # https://github.com/codespell-project/codespell/issues/1498 | ||
| # Python formatting | ||
| - repo: https://github.com/psf/black | ||
| rev: 23.7.0 | ||
| hooks: | ||
| - id: black | ||
| # R formatting | ||
| - repo: https://github.com/lorenzwalthert/precommit | ||
| rev: v0.1.2 | ||
| hooks: | ||
| - id: style-files | ||
| # general linting | ||
| - repo: https://github.com/pre-commit/mirrors-prettier | ||
| rev: v2.7.1 | ||
| hooks: | ||
| - id: prettier | ||
| # enforce commit format | ||
| - repo: https://github.com/compilerla/conventional-pre-commit | ||
| rev: v2.3.0 | ||
| hooks: | ||
| - id: conventional-pre-commit | ||
| stages: [commit-msg] | ||
| args: [] | ||
| - repo: https://github.com/citation-file-format/cffconvert | ||
| rev: 054bda51dbe278b3e86f27c890e3f3ac877d616c | ||
| hooks: | ||
| - id: validate-cff |
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| @@ -0,0 +1,8 @@ | ||
| # gitignore | ||
| .nextflow* | ||
| work/ | ||
| data/ | ||
| results/ | ||
| .DS_Store | ||
| *.code-workspace | ||
| assets/*.html |
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| @@ -0,0 +1,7 @@ | ||
| overrides: | ||
| - files: | ||
| - "*.md" | ||
| - "*.cff" | ||
| - ".prettierrc" | ||
| options: | ||
| tabWidth: 2 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,21 +1,29 @@ | ||
| cff-version: 1.2.0 | ||
| message: "If you use CARLISLE, please cite it as below." | ||
| authors: | ||
| - family-names: "Sevilla" | ||
| given-names: "Samantha" | ||
| orcid: "https://orcid.org/0000-0002-8734-9875" | ||
| - family-names: "Koparde" | ||
| given-names: "Vishal" | ||
| orcid: "https://orcid.org/0000-0001-8978-8495" | ||
| - family-names: "Chou" | ||
| given-names: "Hsien-chao" | ||
| orcid: "https://orcid.org/0000-0002-4870-9663" | ||
| - family-names: "Kim" | ||
| given-names: "Sohyoung" | ||
| - family-names: "Hu" | ||
| given-names: "Yue" | ||
| - family-names: "Saloura" | ||
| given-names: "Vassiliki" | ||
| - family-names: "Sevilla" | ||
| given-names: "Samantha" | ||
| orcid: "https://orcid.org/0000-0002-8734-9875" | ||
| affiliation: Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA | ||
| - family-names: "Koparde" | ||
| given-names: "Vishal" | ||
| orcid: "https://orcid.org/0000-0001-8978-8495" | ||
| affiliation: Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA | ||
| - family-names: "Chou" | ||
| given-names: "Hsien-chao" | ||
| orcid: "https://orcid.org/0000-0002-4870-9663" | ||
| - family-names: "Kim" | ||
| given-names: "Sohyoung" | ||
| - family-names: "Hu" | ||
| given-names: "Yue" | ||
| - family-names: "Saloura" | ||
| given-names: "Vassiliki" | ||
| title: "Cut And Run anaLysIS pipeLinE (CARLISLE)" | ||
| url: https://ccbr.github.io/CARLISLE/ | ||
| repository-code: https://github.com/CCBR/CARLISLE | ||
| identifiers: | ||
| - description: Archived snapshots of all versions | ||
| type: doi | ||
| value: 10.5281/zenodo.10483876 | ||
| version: 2.4.1 | ||
| url: "https://github.com/CCBR/CARLISLE" | ||
| date-released: 2024-01-10 |
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