Dev #89
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Dev #89
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1. Introduced deeptools_bw/deeptools_prep/deeptools_heatmap to create heatmaps from bigwig files. This functionality is adapted from CCBR pipeliner's chipseq.
2. In the deeptools/clean folder, I've retained certain intermediate files:
a. BAM files, filtered to only include reads in chr1-chr22, chrX, and chrY, which differ from the BAM file you provided.
b. Normalized bigwig files that differ from your bigwig file.
3. Made adjustments to cluster_rhel8.yaml and tools_rhel8.yaml concerning package versions and configuration.
4. In the Snakefile definition run_qc(wildcards), I replaced "extend" with "append" to fix a minor bug.
5. Established a CONTROL_to_TREAT_DICT in init.smk for rule deeptools_heatmap
Feature/yues fork
-complete spook and jobby add
Feature/spook
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feature: #88
feature: #85
bug: transition from biowulf to rhel8
feature: github actions test workflow