Refactor samplesheet to handle multiple treatments & controls #90
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Install nextflow | |
| uses: nf-core/setup-nextflow@v1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| pip install .[dev,test] | |
| python -c 'from crispin.src.util import chmod_bins_exec; chmod_bins_exec()' | |
| - name: Check CLI basics | |
| run: | | |
| which crispin | |
| crispin --version | |
| crispin --citation | |
| - name: Test stub run | |
| run: | | |
| cd tests/ | |
| crispin init | |
| crispin run -profile ci_stub -stub | |
| build-status: # https://github.com/orgs/community/discussions/4324#discussioncomment-3477871 | |
| runs-on: ubuntu-latest | |
| needs: [build] | |
| if: always() | |
| steps: | |
| - name: Successful build | |
| if: ${{ !(contains(needs.*.result, 'failure')) }} | |
| run: exit 0 | |
| - name: Failing build | |
| if: ${{ contains(needs.*.result, 'failure') }} | |
| run: exit 1 |