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Update CLI #16

Merged
merged 5 commits into from
Oct 16, 2023
Merged

Update CLI #16

merged 5 commits into from
Oct 16, 2023

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kelly-sovacool
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@kelly-sovacool kelly-sovacool commented Oct 16, 2023 •
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Changes

  • New option --mode to run locally or on slurm.
  • Modify the nextflow profile depending on the HPC detected.
  • Option to run the local install or use a version on GitHub.
  • Added a biowulf-specific install script.

Issues

Resolves #15

PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • [ ] Write unit tests for any new features, bug fixes, or other code changes. testing framework not yet implemented
  • [ ] Update docs if there are any API changes. on hold until before public release
  • [ ] If a new nextflow process is implemented, define the process container and stub.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

@kelly-sovacool kelly-sovacool merged commit 6112eab into main Oct 16, 2023
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@kelly-sovacool kelly-sovacool mentioned this pull request Oct 16, 2023
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Update CLI from CHAMPAGNE
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@kelly-sovacool