Merge branch 'docker' into dev/feature-SVCNV

CCBR · Nov 22, 2023 · 065aea9 · 065aea9
2 parents ba00d4e + 095b8ed
commit 065aea9
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diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
@@ -22,7 +22,7 @@ jobs:
         python /opt2/logan --fastq "/opt2/.tests/*R{1,2}.fastq.gz" \
         --vc --sv --cnv \
         --output /opt2/output_tn_fqs \
-        --paired --sample_sheet "/opt2/.tests/pairs.tsv" --stub
+        --sample_sheet "/opt2/.tests/pairs.tsv" --stub
     - name: Tumor-only FastQ Stub Run
       run: |
         docker run -v $PWD:/opt2 nextflow/nextflow:22.10.8 \

diff --git a/docker/logan_base/build.sh b/docker/logan_base/build.sh
@@ -5,9 +5,11 @@
 #docker buildx build --platform linux/amd64 -f Dockerfile -t dnousome/ccbr_logan_base:v0.3.0 -t dnousome/ccbr_logan_base:latest --push .
 
 docker build --platform linux/amd64 --tag ccbr_logan_base:v0.3.3 -f Dockerfile . 
+
 docker tag ccbr_logan_base:v0.3.3 dnousome/ccbr_logan_base:v0.3.3
 docker tag ccbr_logan_base:v0.3.3 dnousome/ccbr_logan_base
 
+
 docker push dnousome/ccbr_logan_base:v0.3.3
 docker push dnousome/ccbr_logan_base:latest