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scRNASeq changes Feb 2020 #438

Merged
merged 4 commits into from
Apr 10, 2020
Merged

scRNASeq changes Feb 2020 #438

merged 4 commits into from
Apr 10, 2020

Commits on Mar 3, 2020

  1. scRNASeq changes Feb 2020

    @wong-nw
    wong-nw committed Mar 3, 2020
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Commits on Apr 8, 2020

  1. March updates

    @wong-nw
    wong-nw committed Apr 8, 2020
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Commits on Apr 10, 2020

  1. Merging activeDev for v4.0.1 release (#444) 

    * Fix sequenza error

* Scrnaseq (#437)

Scrnaseq: miRNA-seq changes and scRNA-seq changes

* Symlink counts matrix if "counts/" exists in users rawdata directory

* Dectect if users is starting from a raw counts matrix

* Updating pop-up box dialogue after detection of new counts matrix filetype

* Find differential expression metadata in "/path/to/rawdata/counts/"

* Readability: checking for counts matrix outside conditional statement

* Adding "--alignEndsProtrude 10 ConcordantPair --peOverlapNbasesMin 10" to the first and second pass of STAR

* Explicitly loading 'python/2.7': default version of python changing to '3.7'

Co-authored-by: Mayank  Tandon <[email protected]>
Co-authored-by: wong-nw <[email protected]>
Co-authored-by: jlac <[email protected]>
    @skchronicles @mtandon09
    @wong-nw @jlac
    4 people authored Apr 10, 2020
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  2. Pulling in the latest activeDev changes

    @skchronicles
    skchronicles committed Apr 10, 2020
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