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fix: increase mem for some rules; gatk contamination not run as localrule #104

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merged 5 commits into from
Aug 14, 2024

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samarth8392
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Changes

Increased memory for rule bwa mem, kraken, merge somatic callers. Removed gatk contamination as a local rule.

Issues

fixes #89

PR Checklist

  • This comment contains a description of changes with justifications, with any relevant issues linked.
    - [ ] Update docs if there are any API changes.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/

@dnousome
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Looks good.

@dnousome dnousome merged commit 1c5fff4 into main Aug 14, 2024
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@dnousome dnousome deleted the iss-89 branch August 14, 2024 13:59
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Successfully merging this pull request may close these issues.

Local rule: insufficient memory for the Java Runtime Environment
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