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Merge pull request #622 from lfnothias/CCMS-UCSD-master
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Update FBMN citation in automatic workflow description
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mwang87 authored Oct 23, 2020
2 parents 1a881fe + bae05f9 commit ea6e5fa
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Expand Up @@ -10,7 +10,7 @@ def write_description(param_xml_filename, output_description_filename):
output_sentences = []
#INTRODUCTION
output_sentences.append('<strong>Molecular Networking and Spectral Library Search</strong><br><br>\n')
output_sentences.append('A molecular network was created with the Feature-Based Molecular Networking (FBMN) workflow (<a href="https://doi.org/10.1101/812404">Nothias LF et al. bioRxiv 2019</a>) on GNPS (<a href="https://gnps.ucsd.edu">https://gnps.ucsd.edu</a>, <a href="https://doi.org/10.1038/nbt.3597"> Wang M et al. Nat. Biotech. 2016</a>). \n')
output_sentences.append('A molecular network was created with the Feature-Based Molecular Networking (FBMN) workflow (<a href="https://www.nature.com/articles/s41592-020-0933-6">Nothias L-F, Petras D, Schmid R et al. Nature Methods 17, 905–908 (2020)</a>) on GNPS (<a href="https://gnps.ucsd.edu">https://gnps.ucsd.edu</a>, <a href="https://doi.org/10.1038/nbt.3597"> Wang M et al. Nat. Biotech. 2016</a>). \n')


#FBMN PROCESSING
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