Docstanya (#298)

* add requirements.txt

* remove cdat_info

* remote cdat_info

* fix latex_logo png

* pin pyopenssl to 17.2.0 due to myproxyclient failure in py3

* update TOC

* work on tables and setup

* try to force jquery 3.1

* just copy js script in _static

* add highlight python

* add sample dataset page

* add sample dataset page

* work on tables for cdms_2.rst

* continue cdms2 documentations

* update cdms2 tables

* update sections

* update table

* finish chapter 2

* fix litteral error

* unlink .dodsrc for cdscan

* First changes from Tanya

* some change in chapter 1 and 2

* some changes in Chapter 2

* fix tables

* Some changes to Chapter 2

* Some Changes to Chapter 2

* Some changes made to Chapters 1, 2 and 4

* Some changes to Chapter 2

* Some Changes made to Chapter 2

* Some changes to Chapters 2, 3 and 4

* Some changes made to 1 through Appendix

* Some Changes made to Chapter 2

* Some Changes to Chapters 1, 2, 3, 6 and Appendix

* Some changes made to Chapters 1 thru 7 and appendix

* Some changes to Chpaters 1, 2 and 3

* Changes made to Chapters 1, 4, 5 and Appendix

* Some changes to Chapter 2 and 4

* Some Changes to Images, Chapter 3 and Appendix

* update logo

* add my logo

* fix chapter 1 test

* Some changes made to Chapters 2, 3 and 5

* Some Changes to Chapters 1 and 2

* Some changes to Appendix

* update banner/footer and version

* Some Changes to Chapters 1, 2, 3 and appendix

* change u to uold in example

* Some changes to Chapters 2, 4, 5 and 6

* Some changes to Regrid 2, Lib, esmf, gsRegrid and horizontal

* Changes made to Chapters 1-7 and sample data

* fix API documentation

* rename regrid2 directory and delete print message

* add module API files

* add future and mock requirements

* get cwd for readthedocs

* Changes made to API

* Changes made to API

* Changes made to API

* Changes to API

* test rtd with mock

* add future for readthedocs

* create git.py in ../..

* add esmf

* add print statements for regrid2

* add print for libregrid2

* restore regrid2.Lib for readthedocs

* add mock modules

* add git.py

* try with new mock list

* force git.py

* force git.py

* try readthedocs.yml file

* fix readthedocs maping file

* change type pdb to pdf

* typo requirements.yml

* add dependencies

* add dependencies and change conf.yml

* change API.rst and other rst files

* Changes to API

* UVCDAT_ANONYMOUS_LOG set to false

* check if git.py is there

* add gcc to environment.yml

* try docker environment.yml

* remove git.py

* chage Libregrid to regrid2

* revert

* revert

* add cdms2 class

* delet cdms2 class

* delet cdms2 class

* change conf.py os.path

* Changes to API

* Changes made to API

* Changes to API

* Changes made to API

* Changes to API

* Changes made to API

* Changes made to API

* Changes to API

* Changes to API

* Changes made to API

* Changes made to API

* Changes made to API

* push latest rst files

* Changes made to API

* Made some changes to API

* update documentations

* Changes made to API

* Changes made to API

* Changes made to API

* Changes made to Section 2 and API

* Changes made to Section 2

* Changes made to Chapter 2

* Changes made to Section 2

* Changes made to Chapters 2, 3, 4,5 and 6

* Changes made to Sections 2, 4, 7 and Appendix

* Changes made to Chapter 6 and Appendix

* Changes made to Section 2

* update summary table for API

* add generated files

* Changes made to al sections

* Changes made to Section 2 and API

* Changes made to 2 and API

* Made changes to sections 1 and 2

* Issue#231 (#232)

* fix #225 passing transiant variable as axis

* Fix macOSX

* fix ESMF and NPY_STRING

* fix data._mask comparison for numpy 1.14

* failing test from vcs added here (#234)

* failing test from vcs added here

* ok test passes again

* reverted for now

* commented out test for @durack1

* Cdmsdocsmerge (#223)

* First cdms2 documentation revamp

* latest changes

* add new files and work on avariable documentations

* fix index order

* revamp documentation

* Fixing cdms documentation (docstrings)

* update documentation

* continue to work on docs

* sphinx doctest in manual.rst

* chapter 1 continu

* add requirments.txt for read-the-doc

* move requirements.txt into docs dir

* add requirements

* Chapter 2

* add chapter 3

* finish chapter 3 started chapter 4

* flake8 python files

* chapter 4 regridding

* cdms_4 doctest

* add other chapters

* finish chapter 4

* add chapter 5

* add chapter 6

* cdms chapter 6

* fix TOC

* add chapter 7 and appendix

* merge docs

* add requirements.txt

* remove cdat_info

* remote cdat_info

* fix latex_logo png

* pin pyopenssl to 17.2.0 due to myproxyclient failure in py3

* update TOC

* work on tables and setup

* try to force jquery 3.1

* just copy js script in _static

* add highlight python

* add sample dataset page

* add sample dataset page

* work on tables for cdms_2.rst

* continue cdms2 documentations

* update cdms2 tables

* update sections

* update table

* finish chapter 2

* fix litteral error

* unlink .dodsrc for cdscan

* First changes from Tanya

* some change in chapter 1 and 2

* some changes in Chapter 2

* fix tables

* Some changes to Chapter 2

* Some Changes to Chapter 2

* Some changes made to Chapters 1, 2 and 4

* Some changes to Chapter 2

* Some Changes made to Chapter 2

* Some changes to Chapters 2, 3 and 4

* Some changes made to 1 through Appendix

* Some Changes made to Chapter 2

* Some Changes to Chapters 1, 2, 3, 6 and Appendix

* Some changes made to Chapters 1 thru 7 and appendix

* Some changes to Chpaters 1, 2 and 3

* Changes made to Chapters 1, 4, 5 and Appendix

* Some changes to Chapter 2 and 4

* Some Changes to Images, Chapter 3 and Appendix

* update logo

* add my logo

* fix chapter 1 test

* Fix python3 slice issue(setitem) and flake8 (#243)

* fix python 3 aggregation issue and flake8 (#244)

* Fix python3 slice issue(setitem) and flake8

* update to libnetcdf 4.6

* Netcdf46 (#249)

* Fix python3 slice issue(setitem) and flake8

* update to libnetcdf 4.6

* try circleci unstable label

* try version 2 circleci

* try version 2 circleci

* change workflow name

* change cdtime to cdms

* add certificate to circleci

* add fix conda-upload in circleci 2.0

* update prep_for_build version

* fix curl command

* fix cicleci for cdms

* use unstable channel change uvcdat for cdat

* build cdms on circleci 2.0

* fix circleci config.yml

* change Users/distiler to /Users/denisnadeau

* add gcc_linux

* add LDSHARED for linux

* disable cert and py results

* add gcc_linux-64

* change cdscan link

* fix myproxy

* add esmf and esmpy to py3 env

* Revert "Netcdf46 (#249)" (#250)

This reverts commit a9e29ea.

* Netcdf46 (#251)

* Fix python3 slice issue(setitem) and flake8

* update to libnetcdf 4.6

* try circleci unstable label

* try version 2 circleci

* try version 2 circleci

* change workflow name

* change cdtime to cdms

* add certificate to circleci

* add fix conda-upload in circleci 2.0

* update prep_for_build version

* fix curl command

* fix cicleci for cdms

* use unstable channel change uvcdat for cdat

* build cdms on circleci 2.0

* fix circleci config.yml

* change Users/distiler to /Users/denisnadeau

* add gcc_linux

* add LDSHARED for linux

* disable cert and py results

* add gcc_linux-64

* change cdscan link

* fix myproxy

* add esmf and esmpy to py3 env

* inverse dodsrc and curl commands

* move unlink above cdscan test

* fix ESGF test

* add new dodsrc files

* create dodsrc on-demand

* put back tests for unstable

* Netcdf46 (#252)

* Fix python3 slice issue(setitem) and flake8

* update to libnetcdf 4.6

* try circleci unstable label

* try version 2 circleci

* try version 2 circleci

* change workflow name

* change cdtime to cdms

* add certificate to circleci

* add fix conda-upload in circleci 2.0

* update prep_for_build version

* fix curl command

* fix cicleci for cdms

* use unstable channel change uvcdat for cdat

* build cdms on circleci 2.0

* fix circleci config.yml

* change Users/distiler to /Users/denisnadeau

* add gcc_linux

* add LDSHARED for linux

* disable cert and py results

* add gcc_linux-64

* change cdscan link

* fix myproxy

* add esmf and esmpy to py3 env

* inverse dodsrc and curl commands

* move unlink above cdscan test

* fix ESGF test

* add new dodsrc files

* create dodsrc on-demand

* put back tests for unstable

* instal anaconda-client before calling conda-upload

* Changes made to API

* Made some changes to API

* Changes made to API

* Changes made to API

* Changes made to API

* Changes made to Section 2 and API

* Changes made to Section 2

* Changes made to Chapter 2

* Changes made to Section 2

* Changes made to Chapters 2, 3, 4,5 and 6

* Changes made to Sections 2, 4, 7 and Appendix

* Changes made to Chapter 6 and Appendix

* Changes made to Section 2

* Changes made to al sections

* Changes made to Section 2 and API

* Changes made to 2 and API

* Made changes to sections 1 and 2

* Issue#231 (#232)

* fix #225 passing transiant variable as axis

* Fix macOSX

* fix ESMF and NPY_STRING

* fix data._mask comparison for numpy 1.14

* Fix python3 slice issue(setitem) and flake8 (#243)

* fix python 3 aggregation issue and flake8 (#244)

* Fix python3 slice issue(setitem) and flake8

* update to libnetcdf 4.6

* Netcdf46 (#249)

* Fix python3 slice issue(setitem) and flake8

* update to libnetcdf 4.6

* try circleci unstable label

* try version 2 circleci

* try version 2 circleci

* change workflow name

* change cdtime to cdms

* add certificate to circleci

* add fix conda-upload in circleci 2.0

* update prep_for_build version

* fix curl command

* fix cicleci for cdms

* use unstable channel change uvcdat for cdat

* build cdms on circleci 2.0

* fix circleci config.yml

* change Users/distiler to /Users/denisnadeau

* add gcc_linux

* add LDSHARED for linux

* disable cert and py results

* add gcc_linux-64

* change cdscan link

* fix myproxy

* add esmf and esmpy to py3 env

* Revert "Netcdf46 (#249)" (#250)

This reverts commit a9e29ea.

* Netcdf46 (#251)

* Fix python3 slice issue(setitem) and flake8

* update to libnetcdf 4.6

* try circleci unstable label

* try version 2 circleci

* try version 2 circleci

* change workflow name

* change cdtime to cdms

* add certificate to circleci

* add fix conda-upload in circleci 2.0

* update prep_for_build version

* fix curl command

* fix cicleci for cdms

* use unstable channel change uvcdat for cdat

* build cdms on circleci 2.0

* fix circleci config.yml

* change Users/distiler to /Users/denisnadeau

* add gcc_linux

* add LDSHARED for linux

* disable cert and py results

* add gcc_linux-64

* change cdscan link

* fix myproxy

* add esmf and esmpy to py3 env

* inverse dodsrc and curl commands

* move unlink above cdscan test

* fix ESGF test

* add new dodsrc files

* create dodsrc on-demand

* put back tests for unstable

* Netcdf46 (#252)

* Fix python3 slice issue(setitem) and flake8

* update to libnetcdf 4.6

* try circleci unstable label

* try version 2 circleci

* try version 2 circleci

* change workflow name

* change cdtime to cdms

* add certificate to circleci

* add fix conda-upload in circleci 2.0

* update prep_for_build version

* fix curl command

* fix cicleci for cdms

* use unstable channel change uvcdat for cdat

* build cdms on circleci 2.0

* fix circleci config.yml

* change Users/distiler to /Users/denisnadeau

* add gcc_linux

* add LDSHARED for linux

* disable cert and py results

* add gcc_linux-64

* change cdscan link

* fix myproxy

* add esmf and esmpy to py3 env

* inverse dodsrc and curl commands

* move unlink above cdscan test

* fix ESGF test

* add new dodsrc files

* create dodsrc on-demand

* put back tests for unstable

* instal anaconda-client before calling conda-upload

* Fix table titles

* Change made to Section 4

* fix bindex issue in hgrid

* Changes to all

* Corrections made to API Lib

* Changes to API

* fix ascii art

* Changes to Sections 2, 4 and 5

* Changes made to all

* Changes made to Sections 2, 6 and Appendix

* Changes made to Section 2

* Changes made to Section 2

* Changes made to Section 2 and 5

* Changes to Sections 2, 6 and 7

* Changes to API

* Changes made to API

* Made Changes to API

* Changes made to API

* Changes made to Section 4 and 7

* Changes made to API

* Changes made to API

* Revisit run tests (#262)

* migrate run_tests.py to use TestRunnerBase

* remove accidentally added tests/coverage.json

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* revisit run_tests.py

* add cacert.pem in run_tests.py when running cdms test within the lab

* add cacert.pem in run_tests.py when running cdms test within the lab

* add cacert.pem in run_tests.py when running cdms test within the lab

* add cacert.pem in run_tests.py when running cdms test within the lab - rerun tests

* add cacert.pem in run_tests.py when running cdms test within the lab - remove install from -c cdat/label/unstable

* put back -c cdat/label/unstable

* fix Axis.py

* update documentation

* fix environment dependencies

* add/remote generated files

* try to fix API.rst

* add regrid2 to docs

* Changes made to API

* fix space with parameters

* fix readthedocs using numpydoc

* update environment

* fix some autodocs

* add hgrid

* Changes made to API

* Changes made to API

* fix avariable bad location methods

* Changes to Appendix and API

* Changes to Chapter 1 and 2

* Changes made to Section 2

* Changes made to Section 2

* Changes made to Section 2

* Changes to sections 1, 2, 3 and 4

* Changes to section 2

* Changes made to entire docuemnt

* Changes to Section 1 and 2

* Changes made to Section 2

* Changes made to Sections 2 thru 6

* Changes made to Chapters 3 and 6

* add jupyter notebook

* Changes to all

* Changes to Jupyter Notebooks

* Changes to all

* update documentation for version 3.1.0

* merge documentations

* change banner and sidebar colors

* Changes to API

* fix style sheet

* Changes to API

* Changes to API

* Changes to API and Sections

* Changes to all

* will this fix master? (#292)

* Changes to Sections 1 and 2

* fix cdtime and scripts

* trigger read-the-docs

* fix more cdtime doc issues

* fix typo Default-Calendar

* fix conflicts

* pass flake8

* Changes