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Docstanya #316

Merged
merged 327 commits into from
Apr 9, 2019
Merged

Docstanya #316

merged 327 commits into from
Apr 9, 2019
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Mar 28, 2018

  1. add my logo

    dnadeau4 committed Mar 28, 2018
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  3. fix chapter 1 test

    dnadeau4 committed Mar 28, 2018
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Commits on Mar 29, 2018

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Commits on Apr 3, 2018

  1. Some changes to Appendix

    reshel3 committed Apr 3, 2018
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Commits on Apr 4, 2018

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Commits on Apr 9, 2018

  1. change u to uold in example

    dnadeau4 committed Apr 9, 2018
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Commits on Apr 16, 2018

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Commits on Apr 17, 2018

  1. fix API documentation

    reshel3 committed Apr 17, 2018
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  3. add module API files

    reshel3 committed Apr 17, 2018
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  5. get cwd for readthedocs

    reshel3 committed Apr 17, 2018
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Commits on Apr 18, 2018

  1. Changes made to API

    reshel3 committed Apr 18, 2018
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Commits on Apr 20, 2018

  1. Changes made to API

    reshel3 committed Apr 20, 2018
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Commits on Apr 23, 2018

  1. Changes to API

    reshel3 committed Apr 23, 2018
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Commits on Apr 24, 2018

  1. test rtd with mock

    dnadeau4 committed Apr 24, 2018
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  2. add future for readthedocs

    dnadeau4 committed Apr 24, 2018
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  3. create git.py in ../..

    dnadeau4 committed Apr 24, 2018
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  4. fix conflicts

    dnadeau4 committed Apr 24, 2018
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  5. add esmf

    dnadeau4 committed Apr 24, 2018
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  7. add print for libregrid2

    dnadeau4 committed Apr 24, 2018
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  9. add mock modules

    dnadeau4 committed Apr 24, 2018
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  10. add git.py

    dnadeau4 committed Apr 24, 2018
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  11. try with new mock list

    dnadeau4 committed Apr 24, 2018
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  12. force git.py

    dnadeau4 committed Apr 24, 2018
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  13. force git.py

    dnadeau4 committed Apr 24, 2018
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  14. try readthedocs.yml file

    dnadeau4 committed Apr 24, 2018
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  15. fix readthedocs maping file

    dnadeau4 committed Apr 24, 2018
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  16. change type pdb to pdf

    dnadeau4 committed Apr 24, 2018
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  17. typo requirements.yml

    dnadeau4 committed Apr 24, 2018
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  18. add dependencies

    dnadeau4 committed Apr 24, 2018
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  21. Changes to API

    reshel3 committed Apr 24, 2018
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Commits on Apr 25, 2018

  1. check if git.py is there

    dnadeau4 committed Apr 25, 2018
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  2. add gcc to environment.yml

    dnadeau4 committed Apr 25, 2018
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  3. try docker environment.yml

    dnadeau4 committed Apr 25, 2018
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  4. remove git.py

    dnadeau4 committed Apr 25, 2018
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  5. fix conflicts

    dnadeau4 committed Apr 25, 2018
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  6. chage Libregrid to regrid2

    dnadeau4 committed Apr 25, 2018
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  7. revert

    dnadeau4 committed Apr 25, 2018
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  8. revert

    dnadeau4 committed Apr 25, 2018
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  9. add cdms2 class

    Denis committed Apr 25, 2018
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  10. delet cdms2 class

    Denis committed Apr 25, 2018
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  11. delet cdms2 class

    Denis committed Apr 25, 2018
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  12. change conf.py os.path

    Denis committed Apr 25, 2018
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Commits on Apr 26, 2018

  1. Changes to API

    reshel3 committed Apr 26, 2018
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Commits on Apr 30, 2018

  1. Changes made to API

    reshel3 committed Apr 30, 2018
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Commits on May 1, 2018

  1. Changes made to API

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Commits on May 2, 2018

  1. Changes to API

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Commits on May 3, 2018

  1. Changes made to API

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Commits on May 9, 2018

  1. Changes made to API

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Commits on May 16, 2018

  1. Changes to API

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  2. Changes to API

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Commits on May 17, 2018

  1. Changes made to API

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Commits on May 18, 2018

  1. Changes made to API

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Commits on May 21, 2018

  1. Changes made to API

    reshel3 committed May 21, 2018
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Commits on May 22, 2018

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  2. push latest rst files

    reshel3 committed May 22, 2018
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Commits on May 23, 2018

  1. Changes made to API

    reshel3 committed May 23, 2018
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Commits on May 24, 2018

  1. Made some changes to API

    reshel3 committed May 24, 2018
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Commits on May 29, 2018

  1. update documentations

    dnadeau4 committed May 29, 2018
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  2. Changes made to API

    reshel3 committed May 29, 2018
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Commits on May 30, 2018

  1. Changes made to API

    reshel3 committed May 30, 2018
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Commits on May 31, 2018

  1. Changes made to API

    reshel3 committed May 31, 2018
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Commits on Jun 1, 2018

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Commits on Jun 4, 2018

  1. Changes made to Section 2

    reshel3 committed Jun 4, 2018
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Commits on Jun 5, 2018

  1. Changes made to Chapter 2

    reshel3 committed Jun 5, 2018
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Commits on Jun 6, 2018

  1. Changes made to Section 2

    reshel3 committed Jun 6, 2018
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Commits on Jun 13, 2018

  1. Changes made to Section 2

    reshel3 committed Jun 13, 2018
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Commits on Jun 14, 2018

  1. update summary table for API

    dnadeau4 committed Jun 14, 2018
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  2. add generated files

    dnadeau4 committed Jun 14, 2018
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  4. Changes made to al sections

    reshel3 committed Jun 14, 2018
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Commits on Jun 18, 2018

  1. Changes made to 2 and API

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Commits on Jun 20, 2018

  1. Issue#231 (#232)

    * fix #225 passing transiant variable as axis
    
    * Fix macOSX
    
    * fix ESMF and NPY_STRING
    
    * fix data._mask comparison for numpy 1.14
    dnadeau4 committed Jun 20, 2018
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  2. failing test from vcs added here (#234)

    * failing test from vcs added here
    
    * ok test passes again
    
    * reverted for now
    
    * commented out test for @durack1
    doutriaux1 authored and dnadeau4 committed Jun 20, 2018
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  3. Cdmsdocsmerge (#223)

    * First cdms2 documentation revamp
    
    * latest changes
    
    * add new files and work on avariable documentations
    
    * fix index order
    
    * revamp documentation
    
    * Fixing cdms documentation (docstrings)
    
    * update documentation
    
    * continue to work on docs
    
    * sphinx doctest in manual.rst
    
    * chapter 1 continu
    
    * add requirments.txt for read-the-doc
    
    * move requirements.txt into docs dir
    
    * add requirements
    
    * Chapter 2
    
    * add chapter 3
    
    * finish chapter 3 started chapter 4
    
    * flake8 python files
    
    * chapter 4 regridding
    
    * cdms_4 doctest
    
    * add other chapters
    
    * finish chapter 4
    
    * add chapter 5
    
    * add chapter 6
    
    * cdms chapter 6
    
    * fix TOC
    
    * add chapter 7 and appendix
    
    * merge docs
    
    * add requirements.txt
    
    * remove cdat_info
    
    * remote cdat_info
    
    * fix latex_logo png
    
    * pin pyopenssl to 17.2.0 due to myproxyclient failure in py3
    
    * update TOC
    
    * work on tables and setup
    
    * try to force jquery 3.1
    
    * just copy js script in _static
    
    * add highlight python
    
    * add sample dataset page
    
    * add sample dataset page
    
    * work on tables for cdms_2.rst
    
    * continue cdms2 documentations
    
    * update cdms2 tables
    
    * update sections
    
    * update table
    
    * finish chapter 2
    
    * fix litteral error
    
    * unlink .dodsrc for cdscan
    
    * First changes from Tanya
    
    * some change in chapter 1 and 2
    
    * some changes in Chapter 2
    
    * fix tables
    
    * Some changes to Chapter 2
    
    * Some Changes to Chapter 2
    
    * Some changes made to Chapters 1, 2 and 4
    
    * Some changes to Chapter 2
    
    * Some Changes made to Chapter 2
    
    * Some changes to Chapters 2, 3 and 4
    
    * Some changes made to 1 through Appendix
    
    * Some Changes made to Chapter 2
    
    * Some Changes to Chapters 1, 2, 3, 6 and Appendix
    
    * Some changes made to Chapters 1 thru 7 and appendix
    
    * Some changes to Chpaters 1, 2 and 3
    
    * Changes made to Chapters 1, 4, 5 and Appendix
    
    * Some changes to Chapter 2 and 4
    
    * Some Changes to Images, Chapter 3 and Appendix
    
    * update logo
    
    * add my logo
    
    * fix chapter 1 test
    dnadeau4 committed Jun 20, 2018
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  5. fix python 3 aggregation issue and flake8 (#244)

    * Fix python3 slice issue(setitem) and flake8
    
    * update to libnetcdf 4.6
    dnadeau4 committed Jun 20, 2018
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  6. Netcdf46 (#249)

    * Fix python3 slice issue(setitem) and flake8
    
    * update to libnetcdf 4.6
    
    * try circleci unstable label
    
    * try version 2 circleci
    
    * try version 2 circleci
    
    * change workflow name
    
    * change cdtime to cdms
    
    * add certificate to circleci
    
    * add fix conda-upload in circleci 2.0
    
    * update prep_for_build version
    
    * fix curl command
    
    * fix cicleci for cdms
    
    * use unstable channel change uvcdat for cdat
    
    * build cdms on circleci 2.0
    
    * fix circleci config.yml
    
    * change Users/distiler to /Users/denisnadeau
    
    * add gcc_linux
    
    * add LDSHARED for linux
    
    * disable cert and py results
    
    * add gcc_linux-64
    
    * change cdscan link
    
    * fix myproxy
    
    * add esmf and esmpy to py3 env
    dnadeau4 committed Jun 20, 2018
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  7. Revert "Netcdf46 (#249)" (#250)

    This reverts commit a9e29ea.
    dnadeau4 committed Jun 20, 2018
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  8. Netcdf46 (#251)

    * Fix python3 slice issue(setitem) and flake8
    
    * update to libnetcdf 4.6
    
    * try circleci unstable label
    
    * try version 2 circleci
    
    * try version 2 circleci
    
    * change workflow name
    
    * change cdtime to cdms
    
    * add certificate to circleci
    
    * add fix conda-upload in circleci 2.0
    
    * update prep_for_build version
    
    * fix curl command
    
    * fix cicleci for cdms
    
    * use unstable channel change uvcdat for cdat
    
    * build cdms on circleci 2.0
    
    * fix circleci config.yml
    
    * change Users/distiler to /Users/denisnadeau
    
    * add gcc_linux
    
    * add LDSHARED for linux
    
    * disable cert and py results
    
    * add gcc_linux-64
    
    * change cdscan link
    
    * fix myproxy
    
    * add esmf and esmpy to py3 env
    
    * inverse dodsrc and curl commands
    
    * move unlink above cdscan test
    
    * fix ESGF test
    
    * add new dodsrc files
    
    * create dodsrc on-demand
    
    * put back tests for unstable
    dnadeau4 committed Jun 20, 2018
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  9. Netcdf46 (#252)

    * Fix python3 slice issue(setitem) and flake8
    
    * update to libnetcdf 4.6
    
    * try circleci unstable label
    
    * try version 2 circleci
    
    * try version 2 circleci
    
    * change workflow name
    
    * change cdtime to cdms
    
    * add certificate to circleci
    
    * add fix conda-upload in circleci 2.0
    
    * update prep_for_build version
    
    * fix curl command
    
    * fix cicleci for cdms
    
    * use unstable channel change uvcdat for cdat
    
    * build cdms on circleci 2.0
    
    * fix circleci config.yml
    
    * change Users/distiler to /Users/denisnadeau
    
    * add gcc_linux
    
    * add LDSHARED for linux
    
    * disable cert and py results
    
    * add gcc_linux-64
    
    * change cdscan link
    
    * fix myproxy
    
    * add esmf and esmpy to py3 env
    
    * inverse dodsrc and curl commands
    
    * move unlink above cdscan test
    
    * fix ESGF test
    
    * add new dodsrc files
    
    * create dodsrc on-demand
    
    * put back tests for unstable
    
    * instal anaconda-client before calling conda-upload
    dnadeau4 committed Jun 20, 2018
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  10. Changes made to API

    reshel3 authored and dnadeau4 committed Jun 20, 2018
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  11. Made some changes to API

    reshel3 authored and dnadeau4 committed Jun 20, 2018
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  12. Changes made to API

    reshel3 authored and dnadeau4 committed Jun 20, 2018
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  13. Changes made to API

    reshel3 authored and dnadeau4 committed Jun 20, 2018
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  14. Changes made to API

    reshel3 authored and dnadeau4 committed Jun 20, 2018
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  15. Changes made to Section 2 and API

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  19. Changes made to Chapters 2, 3, 4,5 and 6

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  23. Changes made to al sections

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  24. Changes made to Section 2 and API

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  25. Changes made to 2 and API

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  26. Made changes to sections 1 and 2

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  27. Issue#231 (#232)

    * fix #225 passing transiant variable as axis
    
    * Fix macOSX
    
    * fix ESMF and NPY_STRING
    
    * fix data._mask comparison for numpy 1.14
    dnadeau4 committed Jun 20, 2018
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  29. fix python 3 aggregation issue and flake8 (#244)

    * Fix python3 slice issue(setitem) and flake8
    
    * update to libnetcdf 4.6
    dnadeau4 committed Jun 20, 2018
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  30. Netcdf46 (#249)

    * Fix python3 slice issue(setitem) and flake8
    
    * update to libnetcdf 4.6
    
    * try circleci unstable label
    
    * try version 2 circleci
    
    * try version 2 circleci
    
    * change workflow name
    
    * change cdtime to cdms
    
    * add certificate to circleci
    
    * add fix conda-upload in circleci 2.0
    
    * update prep_for_build version
    
    * fix curl command
    
    * fix cicleci for cdms
    
    * use unstable channel change uvcdat for cdat
    
    * build cdms on circleci 2.0
    
    * fix circleci config.yml
    
    * change Users/distiler to /Users/denisnadeau
    
    * add gcc_linux
    
    * add LDSHARED for linux
    
    * disable cert and py results
    
    * add gcc_linux-64
    
    * change cdscan link
    
    * fix myproxy
    
    * add esmf and esmpy to py3 env
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  31. Revert "Netcdf46 (#249)" (#250)

    This reverts commit a9e29ea.
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  32. Netcdf46 (#251)

    * Fix python3 slice issue(setitem) and flake8
    
    * update to libnetcdf 4.6
    
    * try circleci unstable label
    
    * try version 2 circleci
    
    * try version 2 circleci
    
    * change workflow name
    
    * change cdtime to cdms
    
    * add certificate to circleci
    
    * add fix conda-upload in circleci 2.0
    
    * update prep_for_build version
    
    * fix curl command
    
    * fix cicleci for cdms
    
    * use unstable channel change uvcdat for cdat
    
    * build cdms on circleci 2.0
    
    * fix circleci config.yml
    
    * change Users/distiler to /Users/denisnadeau
    
    * add gcc_linux
    
    * add LDSHARED for linux
    
    * disable cert and py results
    
    * add gcc_linux-64
    
    * change cdscan link
    
    * fix myproxy
    
    * add esmf and esmpy to py3 env
    
    * inverse dodsrc and curl commands
    
    * move unlink above cdscan test
    
    * fix ESGF test
    
    * add new dodsrc files
    
    * create dodsrc on-demand
    
    * put back tests for unstable
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  33. Netcdf46 (#252)

    * Fix python3 slice issue(setitem) and flake8
    
    * update to libnetcdf 4.6
    
    * try circleci unstable label
    
    * try version 2 circleci
    
    * try version 2 circleci
    
    * change workflow name
    
    * change cdtime to cdms
    
    * add certificate to circleci
    
    * add fix conda-upload in circleci 2.0
    
    * update prep_for_build version
    
    * fix curl command
    
    * fix cicleci for cdms
    
    * use unstable channel change uvcdat for cdat
    
    * build cdms on circleci 2.0
    
    * fix circleci config.yml
    
    * change Users/distiler to /Users/denisnadeau
    
    * add gcc_linux
    
    * add LDSHARED for linux
    
    * disable cert and py results
    
    * add gcc_linux-64
    
    * change cdscan link
    
    * fix myproxy
    
    * add esmf and esmpy to py3 env
    
    * inverse dodsrc and curl commands
    
    * move unlink above cdscan test
    
    * fix ESGF test
    
    * add new dodsrc files
    
    * create dodsrc on-demand
    
    * put back tests for unstable
    
    * instal anaconda-client before calling conda-upload
    dnadeau4 committed Jun 20, 2018
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  34. fix conflict with master

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  35. Fix table titles

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  1. fix bindex issue in hgrid

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  3. Corrections made to API Lib

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  1. fix ascii art

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  2. Fix Conflict

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Commits on Aug 20, 2018

  1. Revisit run tests (#262)

    * migrate run_tests.py to use TestRunnerBase
    
    * remove accidentally added tests/coverage.json
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * revisit run_tests.py
    
    * add cacert.pem in run_tests.py when running cdms test within the lab
    
    * add cacert.pem in run_tests.py when running cdms test within the lab
    
    * add cacert.pem in run_tests.py when running cdms test within the lab
    
    * add cacert.pem in run_tests.py when running cdms test within the lab - rerun tests
    
    * add cacert.pem in run_tests.py when running cdms test within the lab - remove install from -c cdat/label/unstable
    
    * put back -c cdat/label/unstable
    muryanto1 authored and dnadeau4 committed Aug 20, 2018
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  2. merge master

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  3. fix Axis.py

    dnadeau4 committed Aug 20, 2018
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  4. update documentation

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  1. fix environment dependencies

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  2. add/remote generated files

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  3. try to fix API.rst

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  4. add regrid2 to docs

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  6. fix space with parameters

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  8. update environment

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  1. fix some autodocs

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  2. add hgrid

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  1. Changes to Chapter 1 and 2

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  1. add jupyter notebook

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  1. fix conflict merge master

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  3. merge documentations

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  1. fix style sheet

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  1. will this fix master? (#292)

    doutriaux1 authored and Denis Nadeau committed Nov 29, 2018
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  2. Merge branch 'master' into docstanya

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  1. Changes to Sections 1 and 2

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  1. fix cdtime and scripts

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  3. fix conflicts

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  4. trigger read-the-docs

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  1. fix more cdtime doc issues

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  2. fix typo Default-Calendar

    reshel3 committed Jan 5, 2019
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  3. fix conflicts

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  4. pass flake8

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  1. udpate chapter1

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  2. Changes

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  3. add jupyter notebook

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  1. jupyter chapter1 fixed

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  3. cleanup chapter 1 jupyter

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  1. chapter 2 and chapter 3

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  1. clean up

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  2. revert changes

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  1. update chapter4

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  1. chapter 4 regridder opendap

    dnadeau4 committed Jan 26, 2019
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  2. chapter 2 using OpenDAP

    dnadeau4 committed Jan 26, 2019
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  3. chapter 2 using OpenDAP

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  1. update all chapters

    dnadeau4 committed Jan 29, 2019
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Commits on Feb 6, 2019

  1. add chapter4

    reshel3 committed Feb 6, 2019
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  2. fix conflicts

    reshel3 committed Feb 6, 2019
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  3. fix conflicts

    reshel3 committed Feb 6, 2019
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  2. Changes to Section 1, 2

    reshel3 committed Feb 21, 2019
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Commits on Feb 22, 2019

  1. Changes to Sections 1 and 2

    reshel3 committed Feb 22, 2019
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Commits on Feb 25, 2019

  1. Changes to Sections 1-3

    reshel3 committed Feb 25, 2019
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Commits on Feb 27, 2019

  1. Changes to Jupyter Notebooks

    reshel3 committed Feb 27, 2019
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  1. Changes to Sections 1 and 2

    reshel3 committed Mar 6, 2019
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Commits on Mar 7, 2019

  1. Changes to API

    reshel3 committed Mar 7, 2019
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Commits on Mar 8, 2019

  1. fix double Notes section

    reshel3 committed Mar 8, 2019
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Commits on Mar 11, 2019

  1. Changes to API

    reshel3 committed Mar 11, 2019
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Commits on Mar 12, 2019

  1. Changes made to API

    reshel3 committed Mar 12, 2019
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Commits on Mar 13, 2019

  1. Change to API

    reshel3 committed Mar 13, 2019
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  1. Changes to API

    reshel3 committed Mar 14, 2019
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  1. Changes to API

    reshel3 committed Mar 22, 2019
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  1. Changes to Sections

    reshel3 committed Mar 25, 2019
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Commits on Mar 26, 2019

  1. Changes to Sections

    reshel3 committed Mar 26, 2019
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Commits on Mar 27, 2019

  1. Changes to Section 1

    reshel3 committed Mar 27, 2019
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Commits on Mar 28, 2019

  1. Changes to all

    reshel3 committed Mar 28, 2019
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Commits on Apr 4, 2019

  1. Changes to Sections 2 and 4

    reshel3 committed Apr 4, 2019
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  2. fix conflicts

    dnadeau4 committed Apr 4, 2019
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Commits on Apr 8, 2019

  1. flake8 files

    dnadeau4 committed Apr 8, 2019
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