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Example of time-varying rates #54

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@ChiragKumar9 ChiragKumar9 commented Oct 1, 2024

Introduces two ways of modeling time-varying rates in ixa and Rust -- in particular, a seasonal force of infection and a recovery rate that scales with the number of infected people. This PR and the readme focuses on how to model time-varying rates and different methods of doing so.

The example is the same as the basic-infection example, except that it:

  1. Has been updated to include the built-in people module. The tests can therefore be a bit more intense and are properly updated.
  2. Has been updated to include the built-in global_properties module. The R code also reads from the json file and some small bugs in the R code have been cleaned up.
  3. A periodic report has been added!

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@ChiragKumar9 ChiragKumar9 force-pushed the ckk_time_varying_infectiousness_example1 branch from b4a5e59 to 2f961ce Compare October 17, 2024 18:24
@ChiragKumar9 ChiragKumar9 marked this pull request as ready for review October 18, 2024 13:28
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