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Fix epidemic phase analysis #127

Merged
merged 13 commits into from
Aug 1, 2024
Merged

Fix epidemic phase analysis #127

merged 13 commits into from
Aug 1, 2024

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kaitejohnson
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This PR closes #125. Instead of joining the epidemic phases by date, we instead left join to forecast date and location -- so any scores from a single forecast date and location are assigned a single epidemic phase corresponding to the phase assigned using the retrospective R(t) (so with future knowledge).

Revised figures here

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@dylanhmorris dylanhmorris left a comment

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Looks largely good. One key change and a couple suggestions/questions

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LGTM. A couple wording tweaks you can take or leave.

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kaitejohnson and others added 2 commits August 1, 2024 12:20
Co-authored-by: Dylan H. Morris <[email protected]>
Co-authored-by: Dylan H. Morris <[email protected]>
@dylanhmorris dylanhmorris merged commit 56a9c36 into prod Aug 1, 2024
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@dylanhmorris dylanhmorris deleted the 125-fix-epi-phase-analysis branch August 1, 2024 16:45
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Fix the epidemic phase analysis to be based on the phase the forecast date is in
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