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Use pre-processing from wwinference not wweval #172

Merged
merged 17 commits into from
Oct 10, 2024
Merged

Use pre-processing from wwinference not wweval #172

merged 17 commits into from
Oct 10, 2024

Commits on Sep 25, 2024

  1. add additional dplyr deps

    @kaitejohnson
    kaitejohnson committed Sep 25, 2024
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  2. add some fixes to make compatible with wwinference and wweval functio… 

    …ns when necessary
    @kaitejohnson
    kaitejohnson committed Sep 25, 2024
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Commits on Sep 27, 2024

  1. rewrite get input hosp and ww data so that it formats ready to be pas… 

    …sed to wwinference
    @kaitejohnson
    kaitejohnson committed Sep 27, 2024
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  2. set up fit up ww fit, pending fix of wwinference pmf test tolerance

    @kaitejohnson
    kaitejohnson committed Sep 27, 2024
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Commits on Sep 29, 2024

  1. fix fit hosp to also use package with include_ww =FALSE

    @kaitejohnson
    kaitejohnson committed Sep 29, 2024
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  2. very stuck on how to access objects previously in cmdstan object but … 

    …seeming not to be in one we saved in wwinference...
    @kaitejohnson
    kaitejohnson committed Sep 29, 2024
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Commits on Oct 1, 2024

  1. add deduplication into preprocessing

    @kaitejohnson
    kaitejohnson committed Oct 1, 2024
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Commits on Oct 2, 2024

  1. use summarize across

    @kaitejohnson
    kaitejohnson committed Oct 2, 2024
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  2. truncate eval hosp data

    @kaitejohnson
    kaitejohnson committed Oct 2, 2024
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  3. modify to match sample model in wweval

    @kaitejohnson
    kaitejohnson committed Oct 2, 2024
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  4. add location and forecast date cols where needed in pipeline

    @kaitejohnson
    kaitejohnson committed Oct 2, 2024
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  5. modify postprocessing to expect columns from package

    @kaitejohnson
    kaitejohnson committed Oct 2, 2024
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  6. modify colnames and scales so that things look like they did for down… 

    …stream postprocess in wweval
    @kaitejohnson
    kaitejohnson committed Oct 2, 2024
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Commits on Oct 10, 2024

  1. include forecast date and location in get_input_data functions

    @kaitejohnson
    kaitejohnson committed Oct 10, 2024
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  2. add new parameters from wwinference package as inputs, adjust code

    @kaitejohnson
    kaitejohnson committed Oct 10, 2024
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  3. add log offset as default function arg

    @kaitejohnson
    kaitejohnson committed Oct 10, 2024
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  4. add hosp post processing changes needed using wwinference

    @kaitejohnson
    kaitejohnson committed Oct 10, 2024
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