-
Notifications
You must be signed in to change notification settings - Fork 1
Method
CDT-AI edited this page Jul 14, 2024
·
1 revision
This section contains information about the methods used in the project.
nf-core/rnaseq v3.14.0: Data was processed using nf-core/rnaseq v3.14.0 of the nf-core collection of workflows, utilising reproducible software environments from the Bioconda and Biocontainers projects.
The pipeline was executed with Nextflow v24.04.2 using the following command:
nextflow run nf-core/rnaseq --input scripts/samplesheet.csv --outdir results --genome BDGP6 -profile docker
This RNA-seq analysis pipeline employs STAR, RSEM, HISAT2, or Salmon for generating gene and isoform counts, as well as performing thorough quality control checks.