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Icepack port to cori #258

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May 24, 2019
Merged

Icepack port to cori #258

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11 changes: 6 additions & 5 deletions configuration/scripts/icepack.batch.csh
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Original file line number Diff line number Diff line change
Expand Up @@ -84,14 +84,15 @@ cat >> ${jobfile} << EOFB
EOFB

else if (${ICE_MACHINE} =~ cori*) then
@ nthrds2 = ${nthrds} * 2
cat >> ${jobfile} << EOFB
#SBATCH -J ${ICE_CASENAME}
#SBATCH -p shared
###SBATCH -A ${acct}
#SBATCH -n ${ncores}
#SBATCH -t ${ICE_RUNLENGTH}
#SBATCH -L SCRATCH
#SBATCH -C haswell
#SBATCH --qos shared
#SBATCH --ntasks ${ncores}
#SBATCH --time ${ICE_RUNLENGTH}
#SBATCH --cpus-per-task ${nthrds2}
#SBATCH --constraint haswell
###SBATCH -e filename
###SBATCH -o filename
###SBATCH --mail-type FAIL
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20 changes: 11 additions & 9 deletions configuration/scripts/machines/env.cori_intel
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Expand Up @@ -6,42 +6,44 @@ module unload PrgEnv-cray
module unload PrgEnv-gnu
module unload PrgEnv-intel
module unload PrgEnv-pgi
module load PrgEnv-intel/6.0.3
module load PrgEnv-intel/6.0.4

module unload intel
module load intel/17.0.2.174
module load intel/18.0.1.163
module unload gcc
module load gcc/7.3.0

module unload cray-mpich
module unload cray-mpich-abi
module load cray-mpich/7.4.4
module load cray-mpich/7.7.3

module unload cray-hdf5
module unload cray-hdf5-parallel
module unload cray-netcdf
module unload cray-netcdf-hdf5parallel
module unload cray-parallel-netcdf
module load cray-netcdf/4.4.1
module load cray-hdf5/1.10.0
module load cray-parallel-netcdf/1.7.0
module load cray-netcdf/4.6.1.3

module unload cray-libsci

module unload craype
module load craype/2.5.7
module load craype/2.5.15

setenv NETCDF_PATH ${NETCDF_DIR}
setenv OMP_PROC_BIND true
setenv OMP_PLACES threads
limit coredumpsize unlimited
limit stacksize unlimited

setenv ICE_MACHINE_ENVNAME cori
setenv ICE_MACHINE_COMPILER intel
setenv ICE_MACHINE_MAKE gmake
setenv ICE_MACHINE_WKDIR $SCRATCH/ICEPACK_RUNS
setenv ICE_MACHINE_INPUTDATA /global/homes/t/tcraig/cice_consortium
setenv ICE_MACHINE_INPUTDATA /project/projectdirs/ccsm1/cice-consortium/
setenv ICE_MACHINE_BASELINE $SCRATCH/ICEPACK_BASELINE
setenv ICE_MACHINE_SUBMIT "sbatch "
setenv ICE_MACHINE_ACCT P00000000
setenv ICE_MACHINE_QUEUE "debug"
setenv ICE_MACHINE_QUEUE "regular"
setenv ICE_MACHINE_TPNODE 32 # tasks per node
setenv ICE_MACHINE_BLDTHRDS 4
setenv ICE_MACHINE_QSTAT "squeue --jobs="