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Migrate RAVEN GIS utilities and fix the documentation #68

Merged
merged 48 commits into from
Mar 9, 2021
Merged

Migrate RAVEN GIS utilities and fix the documentation #68

merged 48 commits into from
Mar 9, 2021

Commits on Mar 2, 2021

  1. backport gis utilities from RAVEN and refactor gis.py to geoserver.py

    @Zeitsperre
    Zeitsperre committed Mar 2, 2021
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  2. backport gis utilities from RAVEN and refactor gis.py to geoserver.py

    @Zeitsperre
    Zeitsperre committed Mar 2, 2021
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  3. Fix missing Point import

    @Zeitsperre
    Zeitsperre committed Mar 2, 2021
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  4. Adjusted tests and functions to work closer to intended purposes

    @Zeitsperre
    Zeitsperre committed Mar 2, 2021
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  5. Docstring typos, cleaner exceptions, and other small fixes

    @Zeitsperre
    Zeitsperre committed Mar 2, 2021
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Commits on Mar 3, 2021

  1. use pytest.importorskip

    @Zeitsperre
    Zeitsperre committed Mar 3, 2021
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  2. Add marginally-working hydro_routing functions, fix some field format… 

    …ting, use `next(iter(src))` in fiona accessors, blacken
    @Zeitsperre
    Zeitsperre committed Mar 3, 2021
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  3. Working version of upstream basin identification for hydro_routing pr… 

    …oduct, blacken test_utils.py
    @Zeitsperre
    Zeitsperre committed Mar 3, 2021
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Commits on Mar 4, 2021

  1. docstring fixes, remove unneeded notes, use f-strings

    @Zeitsperre
    Zeitsperre committed Mar 4, 2021
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  2. Refactoring of ravenpy.utils into analysis, chekcs, geo, and io; upda… 

    …ted imports for ravenpy tests, and raven-wps processes, and parse_lonlat refactored to raven
    @Zeitsperre
    Zeitsperre committed Mar 4, 2021
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  3. implement tmp_path for io-based tests, move warning message to module… 

    … __init__, adjust if/else code, fix a few tests
    @Zeitsperre
    Zeitsperre committed Mar 4, 2021
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  4. remove an empty return

    @Zeitsperre
    Zeitsperre committed Mar 4, 2021
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  5. reduce circular imports

    @Zeitsperre
    Zeitsperre committed Mar 4, 2021
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Commits on Mar 5, 2021

  1. Fix the Docs (#70) 

    * Mock some imports for RtD

* remove leading :

* Remove/adjust mal-formatted docstrings

* reduce circular imports, remove obsolete API references in user_api.rst

* Docstring cleanups, use sphinx.ext.napoleon, ensure dataclasses in sphinx-rtd.yaml for python=3.6, add API to index.rst, make user_index not indexed

* set autosummary_generate=True and add xarray to environment-rtd.yml

* Add pre-commit and run over all files, excluding RAVEN model configurations

* Do not execute notebooks if we are mocking imports, do not use html_static_path

* Ensure isort uses black profile
    @Zeitsperre
    Zeitsperre authored Mar 5, 2021
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  2. Merge branch 'master' into raven_gis_ports

    @Zeitsperre
    Zeitsperre authored Mar 5, 2021
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  3. re-run pre-commit checks, comment out unused objects, make nbstripout… 

    … keep output, rerun notebooks
    @Zeitsperre
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  4. Add a FIXME

    @Zeitsperre
    Zeitsperre committed Mar 5, 2021
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  5. Removed unused libraries, formatting of docstrings, re-add modules

    @Zeitsperre
    Zeitsperre committed Mar 5, 2021
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  6. Remove xarray from environment-rtd.yml?

    @Zeitsperre
    Zeitsperre committed Mar 5, 2021
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  7. Re-enable xarray and NetCDF4 from environment-rtd.yml

    @Zeitsperre
    Zeitsperre committed Mar 5, 2021
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  8. Re-enable xarray and NetCDF4 from environment-rtd.yml. mock click.

    @Zeitsperre
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  9. extract grid_weight_params to __init__.py, use extracted values for c… 

    …lick, add more click commands to sphinx-click docs
    @Zeitsperre
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  10. Move outside imports inside click command

    @Zeitsperre
    Zeitsperre committed Mar 5, 2021
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  11. remove modules?

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    Zeitsperre committed Mar 5, 2021
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Commits on Mar 6, 2021

  1. Make dev_requirements include gis_requirements, rename test_utils.py … 

    …to test_geo_utilities.py, add note about installation processes
    @Zeitsperre
    Zeitsperre committed Mar 6, 2021
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  2. Add sphinxcontrib-napoleon to environment-rtd.yml, and modules in TOC

    @cjauvin
    cjauvin committed Mar 6, 2021
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  3. Fix test emulator Lievre

    @cjauvin
    cjauvin committed Mar 6, 2021
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  4. Put back createDimension and createVariable calls in aggreg script

    @cjauvin
    cjauvin committed Mar 6, 2021
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  5. Replaced unused vars by wildcards in aggreg script for flake8

    @cjauvin
    cjauvin committed Mar 6, 2021
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  6. Disable climpred logging for test

    @cjauvin
    cjauvin committed Mar 6, 2021
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  7. Some cosmetic changes to the docs (utility scripts in particular)

    @cjauvin
    cjauvin committed Mar 6, 2021
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  8. Add docs/modules.rst

    @cjauvin
    cjauvin committed Mar 6, 2021
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  9. Add docs/ravenpy.rst

    @cjauvin
    cjauvin committed Mar 6, 2021
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Commits on Mar 8, 2021

  1. Fix a test output

    @Zeitsperre
    Zeitsperre committed Mar 8, 2021
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  2. Add a Hydro Routing example notebook

    @Zeitsperre
    Zeitsperre committed Mar 8, 2021
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  3. Add sphinx-apidoc generated files (because RTD cannot do it)

    @cjauvin
    cjauvin committed Mar 8, 2021
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  4. Add the Hydro Routing example notebook to the docs

    @Zeitsperre
    Zeitsperre committed Mar 8, 2021
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  5. Add module-level flavour text

    @Zeitsperre
    Zeitsperre committed Mar 8, 2021
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  6. Add generic WFS tests and reduce persistent tempfile creation

    @Zeitsperre
    Zeitsperre committed Mar 8, 2021
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  7. Update installation procedures

    @Zeitsperre
    Zeitsperre committed Mar 8, 2021
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  8. Fix a typo

    @Zeitsperre
    Zeitsperre committed Mar 8, 2021
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  9. Update setuptools

    @Zeitsperre
    Zeitsperre committed Mar 8, 2021
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Commits on Mar 9, 2021

  1. reviewed hydro routing notebook

    @huard
    huard committed Mar 9, 2021
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  2. Slight modification to hydro_routing notebook

    @Zeitsperre
    Zeitsperre committed Mar 9, 2021
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  3. Adjust imports for tests with GIS dependencies

    @Zeitsperre
    Zeitsperre committed Mar 9, 2021
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  4. Pin geopandas above 0.9.0

    @Zeitsperre
    Zeitsperre committed Mar 9, 2021
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  5. Pyproj pinned to 3.0.0+

    @Zeitsperre
    Zeitsperre committed Mar 9, 2021
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  6. Update the installation process to be two-step for python then C depe… 

    …ndencies
    @Zeitsperre
    Zeitsperre committed Mar 9, 2021
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