Refactor ck2yaml.load_chemkin_file into per-section methods #169
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| name: Post-merge Tests | |
| on: | |
| workflow_dispatch: # allow manual triggering of this workflow | |
| inputs: | |
| outgoing_ref: | |
| description: "The ref to be built. Can be a tag, commit hash, or branch name" | |
| required: true | |
| default: "main" | |
| push: | |
| # Run when the main branch is pushed to | |
| branches: | |
| - main | |
| jobs: | |
| prerelease-cython: | |
| name: Pre-release Cython | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 60 | |
| env: | |
| HDF5_LIBDIR: /usr/lib/x86_64-linux-gnu/hdf5/serial | |
| HDF5_INCLUDEDIR: /usr/include/hdf5/serial | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout the repository | |
| with: | |
| submodules: recursive | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| architecture: x64 | |
| - name: Install Apt dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install libboost-dev libopenblas-dev libhdf5-dev | |
| - name: Upgrade pip | |
| run: python3 -m pip install -U pip setuptools wheel | |
| - name: Install Python dependencies | |
| run: | | |
| python3 -m pip install ruamel.yaml scons numpy pandas pytest pint \ | |
| pytest-xdist pytest-github-actions-annotate-failures graphviz | |
| python3 -m pip install --pre cython | |
| - name: Build Cantera | |
| run: python3 `which scons` build env_vars=all | |
| CXX=clang++-14 CC=clang-14 f90_interface=n extra_lib_dirs=/usr/lib/llvm/lib | |
| -j4 debug=n --debug=time hdf_libdir=$HDF5_LIBDIR hdf_include=$HDF5_INCLUDEDIR | |
| logging=debug | |
| - name: Build Tests | |
| run: python3 `which scons` -j4 build-tests | |
| - name: Run compiled tests | |
| run: python3 `which scons` test-gtest test-legacy --debug=time | |
| - name: Run Python tests | |
| run: | | |
| LD_LIBRARY_PATH=build/lib | |
| python3 -m pytest -raP -v -n auto --durations=50 test/python | |
| ubuntu-docker: | |
| name: Docker 'ubuntu:${{ matrix.image }}' image | |
| strategy: | |
| matrix: | |
| image: [devel, rolling] | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| container: | |
| image: ubuntu:${{ matrix.image }} | |
| env: | |
| HDF5_LIBDIR: /usr/lib/x86_64-linux-gnu/hdf5/serial | |
| HDF5_INCLUDEDIR: /usr/include/hdf5/serial | |
| steps: | |
| - name: Install git on ubuntu:${{ matrix.image }} | |
| run: | | |
| apt update -y | |
| apt install -y git | |
| git config --global init.defaultBranch main | |
| git config --global --add safe.directory /__w/cantera/cantera | |
| - uses: actions/checkout@v4 | |
| name: Checkout the repository | |
| with: | |
| submodules: recursive | |
| - name: Install Apt dependencies | |
| # Use packages from ubuntu image when possible | |
| run: | | |
| apt install -y python3 python3-pip pipenv scons build-essential \ | |
| libboost-dev gfortran libopenmpi-dev libpython3-dev \ | |
| libblas-dev liblapack-dev libhdf5-dev libfmt-dev libyaml-cpp-dev \ | |
| libgtest-dev libgmock-dev libeigen3-dev libsundials-dev \ | |
| cython3 python3-numpy python3-pandas python3-pint python3-graphviz \ | |
| python3-ruamel.yaml python3-setuptools python3-wheel python3-pytest \ | |
| python3-pytest-xdist | |
| gcc --version | |
| - name: Install Python dependencies | |
| run: | | |
| pipenv install pytest-github-actions-annotate-failures | |
| - name: Build Cantera | |
| run: | | |
| scons build env_vars=all -j4 debug=n --debug=time \ | |
| hdf_libdir=$HDF5_LIBDIR hdf_include=$HDF5_INCLUDEDIR \ | |
| system_eigen=y system_fmt=y system_sundials=y system_yamlcpp=y \ | |
| system_blas_lapack=y hdf_support=y f90_interface=y \ | |
| cc_flags=-D_GLIBCXX_ASSERTIONS | |
| - name: Build Tests | |
| run: scons -j4 build-tests | |
| - name: Run compiled tests | |
| run: scons test-gtest test-legacy --debug=time | |
| - name: Run Python tests | |
| run: python3 -m pytest -raP -v -n auto --durations=50 test/python | |
| env: | |
| LD_LIBRARY_PATH: build/lib | |
| fedora-docker: | |
| name: Docker 'fedora:${{ matrix.image }}' image | |
| strategy: | |
| matrix: | |
| image: [rawhide, latest] | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| container: | |
| image: fedora:${{ matrix.image }} | |
| steps: | |
| - name: Install git on fedora:${{ matrix.image }} | |
| run: | | |
| dnf install -y git | |
| git config --global init.defaultBranch main | |
| git config --global --add safe.directory /__w/cantera/cantera | |
| - uses: actions/checkout@v4 | |
| name: Checkout the repository | |
| - name: Install dependencies | |
| # Use packages from Fedora | |
| run: | | |
| dnf install -y boost-devel eigen3-devel fmt-devel gcc gcc-c++ \ | |
| gcc-fortran gmock-devel gtest-devel python3 python3-cython \ | |
| python3-devel python3-numpy python3-pandas python3-pint python3-pip \ | |
| python3-pytest python3-pytest-xdist python3-ruamel-yaml python3-scipy \ | |
| python3-scons python3-wheel sundials-devel yaml-cpp-devel hdf5-devel \ | |
| highfive-devel python3-graphviz | |
| - name: Build Cantera | |
| run: | | |
| scons build -j4 debug=n --debug=time python_package=full f90_interface=y \ | |
| extra_inc_dirs=/usr/include/eigen3 libdirname=/usr/lib64 \ | |
| system_eigen=y system_fmt=y system_blas_lapack=y system_sundials=y \ | |
| system_yamlcpp=y system_blas_lapack=y hdf_support=y | |
| # note: 'system_highfive=y' is omitted as the current packaged version is too old; | |
| # once newer version is available in 'latest', this should be tested as well | |
| - name: Build Tests | |
| run: scons -j4 build-tests | |
| - name: Run compiled tests | |
| run: scons test-gtest test-legacy --debug=time | |
| - name: Run Python tests | |
| run: python3 -m pytest -raP -v -n auto --durations=50 test/python | |
| env: | |
| LD_LIBRARY_PATH: build/lib | |
| ubuntu-python-prerelease: | |
| name: ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 60 | |
| strategy: | |
| matrix: | |
| python-version: ['3.13'] | |
| os: ['ubuntu-22.04', 'ubuntu-24.04'] | |
| fail-fast: false | |
| env: | |
| HDF5_LIBDIR: /usr/lib/x86_64-linux-gnu/hdf5/serial | |
| HDF5_INCLUDEDIR: /usr/include/hdf5/serial | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout the repository | |
| with: | |
| submodules: recursive | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: x64 | |
| allow-prereleases: true | |
| - name: Install Apt dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install libboost-dev gfortran libopenmpi-dev \ | |
| libblas-dev liblapack-dev libhdf5-dev libfmt-dev | |
| gcc --version | |
| - name: Upgrade pip | |
| run: python3 -m pip install -U pip setuptools wheel | |
| - name: Install Python dependencies | |
| run: | | |
| python3 -m pip install ruamel.yaml scons numpy cython pandas pytest \ | |
| pytest-xdist pytest-github-actions-annotate-failures pint graphviz | |
| - name: Build Cantera | |
| run: | | |
| python3 `which scons` build env_vars=all -j4 debug=n --debug=time \ | |
| system_fmt=y hdf_libdir=$HDF5_LIBDIR hdf_include=$HDF5_INCLUDEDIR \ | |
| system_blas_lapack=y hdf_support=y cc_flags=-D_GLIBCXX_ASSERTIONS | |
| - name: Build Tests | |
| run: python3 `which scons` -j4 build-tests | |
| - name: Run compiled tests | |
| run: python3 `which scons` test-gtest test-legacy --debug=time | |
| - name: Run Python tests | |
| run: | | |
| LD_LIBRARY_PATH=build/lib | |
| python3 -m pytest -raP -v -n auto --durations=50 test/python | |
| macos-homebrew: | |
| runs-on: macos-14 | |
| name: Install Latest Python with Homebrew | |
| timeout-minutes: 90 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| name: Checkout the repository | |
| with: | |
| submodules: recursive | |
| # NumPy is installed here for the Python custom rate tests | |
| - name: Install Brew dependencies | |
| run: brew install --display-times boost libomp hdf5 python python-setuptools scons numpy | |
| - name: Set Include folder | |
| run: | | |
| echo "BOOST_INC_DIR=$(brew --prefix)/include" >> $GITHUB_ENV | |
| # This is necessary because of PEP 668 https://peps.python.org/pep-0668/ | |
| # PEP 668 prohibits installation to system Python packages via pip | |
| - name: Create a virtualenv for dependencies | |
| run: | | |
| $(brew --prefix)/bin/python3.12 -m venv .venv | |
| - name: Install Python dependencies | |
| run: | | |
| ./.venv/bin/python -m pip install -U pip setuptools wheel build | |
| ./.venv/bin/python -m pip install ruamel.yaml numpy cython pandas pytest \ | |
| pytest-xdist pytest-github-actions-annotate-failures pint graphviz | |
| - name: Build Cantera | |
| run: $(brew --prefix)/bin/scons build env_vars=all python_cmd="$(pwd)/.venv/bin/python" -j3 debug=n --debug=time boost_inc_dir=${BOOST_INC_DIR} | |
| - name: Build Tests | |
| run: $(brew --prefix)/bin/scons -j3 build-tests | |
| - name: Run compiled tests | |
| run: $(brew --prefix)/bin/scons test-gtest test-legacy --debug=time | |
| - name: Run Python tests | |
| run: | | |
| export DYLD_LIBRARY_PATH=build/lib | |
| ./.venv/bin/python -m pytest -raP -v -n auto --durations=50 test/python |