[CI] Add jobs testing select older Cython versions #227

Workflow file for this run

.github/workflows/post-merge-tests.yml at bb12f25

	name: Post-merge Tests
	on:
	workflow_dispatch: # allow manual triggering of this workflow
	inputs:
	outgoing_ref:
	description: "The ref to be built. Can be a tag, commit hash, or branch name"
	required: true
	default: "main"
	push:
	# Run when the main branch is pushed to
	branches:
	- main
	# Run on pull requests when this file is modified
	pull_request:
	branches:
	- main
	paths:
	- .github/workflows/post-merge-tests.yml

	env:
	PIP_EXTRA_INDEX_URL: https://pypi.anaconda.org/scientific-python-nightly-wheels/simple
	PIP_ONLY_BINARY: ":all:"

	jobs:
	prerelease-cython:
	name: Pre-release Cython
	runs-on: ubuntu-22.04
	timeout-minutes: 60
	steps:
	- uses: actions/checkout@v4
	name: Checkout the repository
	with:
	submodules: recursive
	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.11
	architecture: x64
	- name: Install Apt dependencies
	run: \|
	sudo apt update
	sudo apt install libboost-dev libopenblas-dev libhdf5-dev
	- name: Upgrade pip
	run: python3 -m pip install -U pip setuptools wheel
	- name: Install Python dependencies
	run: \|
	python3 -m pip install ruamel.yaml scons numpy pandas pytest pint \
	pytest-xdist pytest-github-actions-annotate-failures graphviz
	python3 -m pip install --pre cython
	- name: Build Cantera
	run: python3 `which scons` build env_vars=all
	CXX=clang++-14 CC=clang-14 f90_interface=n extra_lib_dirs=/usr/lib/llvm/lib
	-j4 debug=n --debug=time logging=debug python_package=y
	- name: Build Tests
	run: python3 `which scons` -j4 build-tests
	- name: Run compiled tests
	run: python3 `which scons` test-gtest test-legacy --debug=time
	- name: Run Python tests
	run: python3 -m pytest -raP -v -n auto --durations=50 test/python
	env:
	LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib"
	PYTHONPATH: build/python

	ubuntu-docker:
	name: Docker 'ubuntu:${{ matrix.image }}' image
	strategy:
	matrix:
	image: [devel, rolling]
	fail-fast: false
	runs-on: ubuntu-latest
	timeout-minutes: 60
	container:
	image: ubuntu:${{ matrix.image }}
	steps:
	- name: Install git on ubuntu:${{ matrix.image }}
	run: \|
	apt update -y
	apt install -y git
	git config --global init.defaultBranch main
	git config --global --add safe.directory /__w/cantera/cantera
	- uses: actions/checkout@v4
	name: Checkout the repository
	with:
	submodules: recursive
	- name: Install Apt dependencies
	# Use packages from ubuntu image when possible
	run: \|
	apt install -y python3 python3-pip pipenv scons build-essential \
	libboost-dev gfortran libopenmpi-dev libpython3-dev \
	libblas-dev liblapack-dev libhdf5-dev libfmt-dev libyaml-cpp-dev \
	libgtest-dev libgmock-dev libeigen3-dev libsundials-dev \
	cython3 python3-numpy python3-pandas python3-pint python3-graphviz \
	python3-ruamel.yaml python3-setuptools python3-wheel python3-pytest \
	python3-pytest-xdist
	gcc --version
	- name: Install Python dependencies
	run: \|
	pipenv install pytest-github-actions-annotate-failures
	- name: Build Cantera
	run: \|
	scons build env_vars=all -j4 debug=n --debug=time \
	system_eigen=y system_fmt=y system_sundials=y system_yamlcpp=y \
	system_blas_lapack=y hdf_support=y f90_interface=y \
	cc_flags=-D_GLIBCXX_ASSERTIONS python_package=y
	- name: Build Tests
	run: scons -j4 build-tests
	- name: Run compiled tests
	run: scons test-gtest test-legacy --debug=time
	- name: Run Python tests
	run: python3 -m pytest -raP -v -n auto --durations=50 test/python
	env:
	LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib"
	PYTHONPATH: build/python

	fedora-docker:
	name: Docker 'fedora:${{ matrix.image }}' image
	strategy:
	matrix:
	image: [rawhide, latest]
	fail-fast: false
	runs-on: ubuntu-latest
	timeout-minutes: 60
	container:
	image: fedora:${{ matrix.image }}
	steps:
	- name: Install git on fedora:${{ matrix.image }}
	run: \|
	dnf install -y git
	git config --global init.defaultBranch main
	git config --global --add safe.directory /__w/cantera/cantera
	- uses: actions/checkout@v4
	name: Checkout the repository
	- name: Install dependencies
	# Use packages from Fedora
	run: \|
	dnf install -y boost-devel eigen3-devel fmt-devel gcc gcc-c++ \
	gcc-fortran gmock-devel gtest-devel python3 python3-cython \
	python3-devel python3-numpy python3-pandas python3-pint python3-pip \
	python3-pytest python3-pytest-xdist python3-ruamel-yaml python3-scipy \
	python3-scons python3-wheel sundials-devel yaml-cpp-devel hdf5-devel \
	highfive-devel python3-graphviz python3-packaging
	- name: Build Cantera
	run: \|
	scons build -j4 debug=n --debug=time python_package=y f90_interface=y \
	extra_inc_dirs=/usr/include/eigen3 libdirname=/usr/lib64 \
	system_eigen=y system_fmt=y system_blas_lapack=y system_sundials=y \
	system_yamlcpp=y system_blas_lapack=y hdf_support=y
	# note: 'system_highfive=y' is omitted as the current packaged version is too old;
	# once newer version is available in 'latest', this should be tested as well
	- name: Build Tests
	run: scons -j4 build-tests
	- name: Run compiled tests
	run: scons test-gtest test-legacy --debug=time
	- name: Run Python tests
	run: python3 -m pytest -raP -v -n auto --durations=50 test/python
	env:
	LD_LIBRARY_PATH: build/lib
	PYTHONPATH: build/python

	ubuntu-python-prerelease:
	name: ${{ matrix.os }} with Python ${{ matrix.python-version }}
	runs-on: ${{ matrix.os }}
	timeout-minutes: 60
	strategy:
	matrix:
	python-version: ['3.13']
	os: ['ubuntu-22.04', 'ubuntu-24.04']
	fail-fast: false
	steps:
	- uses: actions/checkout@v4
	name: Checkout the repository
	with:
	submodules: recursive
	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	architecture: x64
	allow-prereleases: true
	- name: Install Apt dependencies
	run: \|
	sudo apt update
	sudo apt install libboost-dev gfortran libopenmpi-dev \
	libblas-dev liblapack-dev libhdf5-dev libfmt-dev
	gcc --version
	- name: Upgrade pip
	run: python3 -m pip install -U pip setuptools wheel packaging
	- name: Install Python dependencies
	run: \|
	python3 -m pip install ruamel.yaml scons pytest \
	pytest-xdist pytest-github-actions-annotate-failures pint graphviz
	python3 -m pip install --pre numpy cython pandas scipy
	- name: Build Cantera
	run: \|
	python3 `which scons` build env_vars=all -j4 debug=n --debug=time \
	system_fmt=y system_blas_lapack=y hdf_support=y cc_flags=-D_GLIBCXX_ASSERTIONS \
	python_package=y
	- name: Build Tests
	run: python3 `which scons` -j4 build-tests
	- name: Run compiled tests
	run: python3 `which scons` test-gtest test-legacy --debug=time
	- name: Run Python tests
	run: python3 -m pytest -raP -v -n auto --durations=50 test/python
	env:
	LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib"
	PYTHONPATH: build/python

	macos-homebrew:
	runs-on: macos-14
	name: Install Latest Python with Homebrew
	timeout-minutes: 90
	steps:
	- uses: actions/checkout@v4
	name: Checkout the repository
	with:
	submodules: recursive
	# NumPy is installed here for the Python custom rate tests
	- name: Install Brew dependencies
	run: brew install --display-times boost libomp hdf5 python numpy
	- name: Set Include folder
	run: echo "BOOST_INC_DIR=$(brew --prefix)/include" >> $GITHUB_ENV
	# This is necessary because of PEP 668 https://peps.python.org/pep-0668/
	# PEP 668 prohibits installation to system Python packages via pip
	- name: Create a virtualenv for dependencies
	run: \|
	$(brew --prefix)/bin/python3.12 -m venv .venv
	- name: Install Python dependencies
	# SCons must be installed into the virtualenv because packaging is a dependency
	# and we can't install packaging for the homebrew Python
	run: \|
	./.venv/bin/python -m pip install -U pip setuptools wheel build
	./.venv/bin/python -m pip install ruamel.yaml numpy cython pandas pytest \
	pytest-xdist pytest-github-actions-annotate-failures pint graphviz \
	scons packaging
	- name: Build Cantera
	run: ./.venv/bin/scons build env_vars=all -j3 debug=n --debug=time boost_inc_dir=${BOOST_INC_DIR} python_package=y
	- name: Build Tests
	run: ./.venv/bin/scons -j3 build-tests
	- name: Run compiled tests
	run: ./.venv/bin/scons test-gtest test-legacy --debug=time
	- name: Run Python tests
	run: ./.venv/bin/python -m pytest -raP -v -n auto --durations=50 test/python
	env:
	DYLD_LIBRARY_PATH: "${DYLD_LIBRARY_PATH}:build/lib"
	PYTHONPATH: build/python

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

[CI] Add jobs testing select older Cython versions #227

Workflow file

[CI] Add jobs testing select older Cython versions #227

Jobs

Run details

Workflow file for this run