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examples: Add Binder-compatible Jupyter notebook example
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EricCousineau-TRI committed Jul 31, 2020
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1 change: 1 addition & 0 deletions .binder/.dockerignore
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README.md
58 changes: 58 additions & 0 deletions .binder/Dockerfile
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# -*- mode: dockerfile -*-
# vi: set ft=dockerfile :

FROM ubuntu:18.04

ARG NB_USER=jovyan
ARG NB_UID=1000
ARG NB_GID=100
EXPOSE 7000/tcp
EXPOSE 8888/tcp

RUN export DEBIAN_FRONTEND=noninteractive \
&& apt-get update \
&& apt-get install -y --no-install-recommends \
-o Dpkg::Options::=--force-confdef -o Dpkg::Options::=--force-confnew \
-o Dpkg::Use-Pty=0 \
jupyter-notebook \
locales \
python3-pip \
python3-setuptools \
wget \
&& rm -rf /var/lib/apt/lists/* \
&& locale-gen en_US.UTF-8

# Install later version of castxml.
# See README here: https://github.com/CastXML/CastXMLSuperbuild/tree/75ec9ef4ad48ddab605627d783bfdee57fd7bcbf
# This is v0.3.4 for Linux: https://data.kitware.com/#item/5ee7eb659014a6d84ec1f25c
RUN wget https://data.kitware.com/api/v1/file/5ee7eb659014a6d84ec1f25e/download -O /tmp/castxml.tar.gz \
&& tar xfz /tmp/castxml.tar.gz -C /usr/local --strip-components 1 \
&& rm /tmp/castxml.tar.gz

# Install common C++ libraries for experimenting. These are not necessary to
# use pygccxml itself.
RUN export DEBIAN_FRONTEND=noninteractive \
&& apt-get update \
&& apt-get install -y --no-install-recommends \
-o Dpkg::Options::=--force-confdef -o Dpkg::Options::=--force-confnew \
-o Dpkg::Use-Pty=0 \
libeigen3-dev \
libstdc++-7-dev \
&& rm -rf /var/lib/apt/lists/*

RUN useradd -d "/home/$NB_USER" -G $NB_GID -mU -s /bin/bash "$NB_USER"
ENV HOME="/home/$NB_USER" \
LANG=en_US.UTF-8 \
LANGUAGE=en_US.UTF-8 \
LC_ALL=en_US.UTF-8 \
SHELL=/bin/bash \
USER="$NB_USER"

WORKDIR $HOME
RUN mkdir pygccxml
COPY ["/", "pygccxml/"]
RUN chown -R $NB_UID:$NB_GID \
"$HOME/pygccxml"
USER "$NB_USER"
RUN pip3 --no-cache-dir install -e ./pygccxml
CMD ["jupyter", "notebook", "--ip", "0.0.0.0", "pygccxml/docs/examples/notebook/example.ipynb"]
30 changes: 30 additions & 0 deletions .binder/README.md
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# Docker Image for Binder

<!--
This is derived from the following setup:
https://github.com/RobotLocomotion/drake/tree/dc2a9394d/.binder
-->

*Note that due to Binder conventions, this directory MUST always be in the root
of the repository and named either `binder` or `.binder`. This image is NOT
intended for use by most developers or users.*

To create a Docker image and run a Docker container similar to those used by
[Binder](https://mybinder.org) for local debugging purposes, execute the
following `pull`, `build`, and `run` commands from the top level of this Git
repository:

```bash
cd pygccxml
docker build -f .binder/Dockerfile -t binder .
docker run --rm -it --name mybinder -p 8888:8888 binder
```

Copy and paste the URL (including the login token) that is displayed in the
terminal into the web browser of your choice.

To stop the running container, simply exit it from the terminal with Ctrl+C.

*Note*: If you want to test the Docker image with the current source tree
(without copying, so you can modify source files), add the arguments
`-v ${PWD}:/home/jovyan/pygccxml` to mount it directly.
1 change: 1 addition & 0 deletions .dockerignore
128 changes: 128 additions & 0 deletions docs/examples/notebook/example.ipynb
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{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Example pygccxml notebook on Binder\n",
"\n",
"Running this notebook on Binder allows you to execute the code online.\n",
"\n",
"Please note that provisioning may take about 1-2 minutes.\n",
"\n",
"<a target=\"_doc\" href=\"https://mybinder.org/v2/gh/EricCousineau-TRI/pygccxml/feature-py-notebook-example?filepath=pygccxml/docs/examples/notebook/example.ipynb\">\n",
" <img src=\"https://mybinder.org/badge_logo.svg\"/>\n",
"</a>\n",
"\n",
"The following example shows an example usage of `pygccxml` on Ubuntu\n",
"Bionic, from within a Docker container, for a simple toy C++ API that\n",
"uses both `std::vector` and `Eigen::Matrix<>`. The code is defined inline."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"from pygccxml import declarations\n",
"from pygccxml import utils\n",
"from pygccxml import parser"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Find out the c++ parser. This should resolve to the castxml\n",
"# version installed in Docker.\n",
"generator_path, generator_name = utils.find_xml_generator()\n",
"\n",
"# Configure the xml generator\n",
"config = parser.xml_generator_configuration_t(\n",
" xml_generator_path=generator_path,\n",
" xml_generator=generator_name,\n",
" include_paths=[\"/usr/include/eigen3\"],\n",
" # TODO(eric.cousineau): Why is `compiler_path` necessary?\n",
" compiler_path=generator_path,\n",
")"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"code = r\"\"\"\n",
"#include <vector>\n",
"\n",
"#include <Eigen/Dense>\n",
"\n",
"namespace ns {\n",
"\n",
"template <typename T, typename U = int>\n",
"class ExampleClass {\n",
"public:\n",
" std::vector<T> make_std_vector() const;\n",
" Eigen::Matrix<U, 3, 3> make_matrix3();\n",
"};\n",
"\n",
"// Analyze concrete instantiations of the given class.\n",
"extern template class ExampleClass<int>;\n",
"extern template class ExampleClass<float, float>;\n",
"\n",
"} // namespace ns\n",
"\"\"\"\n",
"\n",
"(global_ns,) = parser.parse_string(code, config)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"scrolled": false
},
"outputs": [],
"source": [
"ns = global_ns.namespace(\"ns\")\n",
"declarations.print_declarations([ns])"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"# Retrieve an instantiation and show template parameters.\n",
"cls, = ns.classes('ExampleClass<float, float>')\n",
"declarations.templates.split(cls.name)"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.9"
}
},
"nbformat": 4,
"nbformat_minor": 4
}

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