CellProfiler-Explorer

Web app built with dash for exploring CellProfiler data and combining with metadata

Set up dev environment

There is a provided .yml file for creating the minimal environment to run the dash app. To load this using (mamba)[https://mamba.readthedocs.io/en/latest/installation.html] or (conda)[https://docs.anaconda.com/anaconda/install/index.html], navigate to this repo in terminal and run the appropriate command below:

mamba env create --file env.yaml
conda env create --file env.yaml

How to run the app locally

Navigate to this repo in terminal and enter python app.py and visit http://127.0.0.1:8050/ in your web browser.

The repo includes Cells.csv, which can be dragged and dropped into the app to load as an example dataset.