Merge branch 'release/v2.1.3'

.gitignore

@@ -1,6 +1,28 @@
+# Files generated by invoking Julia with --code-coverage
 *.jl.cov
 *.jl.*.cov
+
+# Files generated by invoking Julia with --track-allocation
 *.jl.mem
+
+# System-specific files and directories generated by the BinaryProvider and BinDeps packages
+# They contain absolute paths specific to the host computer, and so should not be committed
+deps/deps.jl
+deps/build.log
+deps/downloads/
+deps/usr/
+deps/src/
+
+# Build artifacts for creating documentation generated by the Documenter package
+docs/build/
+docs/site/
+
+# File generated by Pkg, the package manager, based on a corresponding Project.toml
+# It records a fixed state of all packages used by the project. As such, it should not be
+# committed for packages, but should be committed for applications that require a static
+# environment.
+Manifest.toml
+
 ### Linux template
 *~
 
@@ -197,4 +219,3 @@ Temporary Items
 
 # Temporary
 # Auto-generated tag files
-

Project.toml

@@ -1,7 +1,7 @@
 name = "BedgraphFiles"
 uuid = "85eb9095-274b-55ce-be28-9e90f41ac741"
 authors = ["Ciarán O'Mara <[email protected]>"]
-version = "2.1.2"
+version = "2.1.3"
 
 [deps]
 Bedgraph = "0bcc2ff6-69eb-520d-bede-0374fc5bd2fd"
@@ -17,7 +17,7 @@ TableTraitsUtils = "382cd787-c1b6-5bf2-a167-d5b971a19bda"
 [compat]
 Bedgraph = "^1.1"
 FileIO = "^1.0.1"
-IterableTables = ">=0.9.0"
+IterableTables = "^0.9, ^0.10, ^0.11, ^1"
 IteratorInterfaceExtensions = "^0.1.1, ^1"
 TableShowUtils = "^0.2.0"
 TableTraits = "^0.4, ^1"
@@ -26,9 +26,9 @@ julia = "0.7, ^1"
 
 [extras]
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 Query = "1a8c2f83-1ff3-5112-b086-8aa67b057ba1"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [targets]
 test = ["DataFrames", "Test", "Query", "Logging"]

README.md

@@ -1,7 +1,7 @@
 # BedgraphFiles.jl
 
 [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
-[![Build Status](https://travis-ci.org/CiaranOMara/BedgraphFiles.jl.svg?branch=master)](https://travis-ci.org/CiaranOMara/BedgraphFiles.jl)
+[![Build Status](https://travis-ci.com/CiaranOMara/BedgraphFiles.jl.svg?branch=master)](https://travis-ci.com/CiaranOMara/BedgraphFiles.jl)
 [![Build status](https://ci.appveyor.com/api/projects/status/jny2ep4u3cmly8pj/branch/master?svg=true)](https://ci.appveyor.com/project/CiaranOMara/Bedgraphfiles-jl/branch/master)
 [![Build Status](https://api.cirrus-ci.com/github/CiaranOMara/BedgraphFiles.jl.svg)](https://cirrus-ci.com/github/CiaranOMara/BedgraphFiles.jl)
 [![codecov.io](http://codecov.io/github/CiaranOMara/BedgraphFiles.jl/coverage.svg?branch=master)](http://codecov.io/github/CiaranOMara/BedgraphFiles.jl?branch=master)
@@ -12,13 +12,15 @@ This package provides load and save support for [Bedgraph](https://github.com/Ci
 under the [FileIO](https://github.com/JuliaIO/FileIO.jl) package, and also implements the [IterableTables](https://github.com/davidanthoff/IterableTables.jl) interface for easy conversion between tabular data structures.
 
 ## Installation
-You can install BedgraphFiles from the Julia REPL:
+You can install BedgraphFiles from the Julia REPL.
+Press `]` to enter pkg mode, then enter the following:
+
 ```julia
-using Pkg
-add("BedgraphFiles")
-#Pkg.add("BedgraphFiles") for julia prior to v 0.7
+add BedgraphFiles
 ```
 
+If you are interested in the cutting edge of the development, please check out the [develop branch](https://github.com/CiaranOMara/BedgraphFiles.jl/tree/develop) to try new features before release.
+
 ## Usage
 
 ### Loading bedGraph files

test/integrations/test-DataFrames.jl

@@ -9,10 +9,10 @@
     @test typeof(df) == DataFrame
     @test size(df) == (9,4)
 
-    @test df[:chrom] == Bag.chroms
-    @test df[:first] == Bag.firsts
-    @test df[:last] == Bag.lasts
-    @test df[:value] == Bag.values
+    @test df.chrom == Bag.chroms
+    @test df.first == Bag.firsts
+    @test df.last == Bag.lasts
+    @test df.value == Bag.values
 
     @test DataFrame(Bag.records) == Bag.records |> DataFrame
 
@@ -23,10 +23,10 @@
     @test typeof(df2) == DataFrame
     @test size(df2) == (9,4)
 
-    @test df2[:chrom] == Bag.chroms
-    @test df2[:first] == Bag.firsts
-    @test df2[:last] == Bag.lasts
-    @test df2[:value] == Bag.values
+    @test df2.chrom == Bag.chroms
+    @test df2.first == Bag.firsts
+    @test df2.last == Bag.lasts
+    @test df2.value == Bag.values
 
     @test DataFrame(load(Bag.file)) == load(Bag.file) |> DataFrame
 
@@ -36,10 +36,10 @@
     @test typeof(df3) == DataFrame
     @test size(df3) == (9,4)
 
-    @test df3[:chrom] == Bag.chroms
-    @test df3[:first] == Bag.firsts
-    @test df3[:last] == Bag.lasts
-    @test df3[:value] == Bag.values
+    @test df3.chrom == Bag.chroms
+    @test df3.first == Bag.firsts
+    @test df3.last == Bag.lasts
+    @test df3.value == Bag.values
 
     @test DataFrame(load(Bag.file_headerless)) == load(Bag.file_headerless) |> DataFrame