Subject id search

CHANGELOG.md

@@ -11,6 +11,7 @@ About changelog [here](https://keepachangelog.com/en/1.0.0/)
 - Log users' activity to file by specifying `USERS_ACTIVITY_LOG_PATH` parameter in app config
 - `Mean MT coverage`, `Mean chrom 14 coverage` and `Estimated mtDNA copy number` on MT coverage file from chanjo2 if available
 - In ClinVar multistep form, preselect ACMG criteria according to the variant's ACMG classification, if available
+- Subject id search from caseS page (supporting multiple sample types e.g.) - adding indexes to speed up caseS queries
 ### Changed
 - Documentation for OMICS variants and updating a case
 - Include both creation and deletion dates in gene panels pages

scout/adapter/mongo/case.py

@@ -167,6 +167,7 @@ def _set_case_name_query(self, query: Dict[str, Any], query_term: str):
         query["$or"] = [
             {"display_name": case_name_regex},
             {"individuals.display_name": case_name_regex},
+            {"individuals.subject_id": case_name_regex},
             {"_id": case_name_regex},
         ]
 

scout/constants/indexes.py

@@ -145,11 +145,18 @@
     "case": [
         IndexModel([("synopsis", TEXT)], default_language="english", name="synopsis_text"),
         IndexModel([("causatives", ASCENDING)], name="causatives"),
+        IndexModel([("suspects", ASCENDING)], name="suspects"),
         IndexModel(
             [("collaborators", ASCENDING), ("status", ASCENDING), ("updated_at", ASCENDING)],
             name="collaborators_status_updated_at",
         ),
-        IndexModel([("owner", ASCENDING), ("display_name", ASCENDING)], name="owner_display_name"),
+        IndexModel(
+            [
+                ("owner", ASCENDING),
+                ("display_name", ASCENDING),
+            ],
+            name="owner_display_name",
+        ),
     ],
     "managed_variant": [
         IndexModel(