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Microbiome in Liver Transplant Infection Manuscript

Code and Data for our manuscript titled "Fecal metabolite profiling identifies liver transplant recipients at risk for postoperative infection"

Cell Host & Microbe 32, 1–14 (2023)

Published January 10, 2024

https://doi.org/10.1016/j.chom.2023.11.016

DOI


R version 4.2.3 (2023-03-15)

Platform: x86_64-apple-darwin17.0 (64-bit)

Running under: macOS Sonoma 14.0

RStudio Version 2023.06.1+524

Processor: 2.4 GHz 8-Core Intel Core i9

Memory: 64 GB 2667 MHz DDR4

Graphics: AMD Radeon Pro 5500M 8 GB


Data Folder Data - Contains all R images (.rds) and a single R Image (.RData) that are used in the analysis

Results Folder Results - Contains all produced figures from the analysis


To download the data there are two options available.

Option A) Download the zipped file at: https://zenodo.org/badge/latestdoi/592530758

Option B) Enable Git Large File Storage:

https://git-lfs.github.com/

Then clone the repository:

https://docs.github.com/en/repositories/creating-and-managing-repositories/cloning-a-repository