Merge pull request #1455 from rolanddenis/fix_moduleCellularTopology

Fixing various links in moduleCellularTopology.dox
DGtal-team · Jan 19, 2020 · 0e4c38f · 0e4c38f
2 parents e043b0e + c7dfa63
commit 0e4c38f
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diff --git a/ChangeLog.md b/ChangeLog.md
@@ -98,7 +98,7 @@
   associated example exampleSurfaceATnormals.cpp (Jacques-Olivier
   Lachaud,[#1442](https://github.com/DGtal-team/DGtal/pull/1442))
 
-- *doc*
+- *Documentation*
   - Promoting the `Shortcuts` documentation page on the main page. (David
     Coeurjolly [#1417](https://github.com/DGtal-team/DGtal/pull/1417))
   - Fixing the `doxyfiles` to have the table of contents of module pages (David
@@ -109,6 +109,9 @@
     (Roland Denis [#1424](https://github.com/DGtal-team/DGtal/pull/1434))
   - CSS edit to enhance the readability of code snippets (David
     Coeurjolly [#1438](https://github.com/DGtal-team/DGtal/pull/1438))
+  - Fixing various links in moduleCellularTopology. Fixing #1454.
+    Removing dead links to ImaGene project.
+    (Roland Denis [#1455](https://github.com/DGtal-team/DGtal/pull/1455))
 
 - *Build*
   - Removing the homemade CPP11 checks, using cmake macro instead

diff --git a/src/DGtal/arithmetic/IntegerComputer.h b/src/DGtal/arithmetic/IntegerComputer.h
@@ -72,8 +72,7 @@ It is a model of boost::CopyConstructible,
 boost::DefaultConstructible, boost::Assignable. All its member data are
 \b mutable.
 
-It is a backport of <a
-href="https://gforge.liris.cnrs.fr/projects/imagene">ImaGene</a>.
+It is a backport of \e ImaGene.
 
 @tparam TInteger any model of integer (CInteger), like \c int, \c long int,
 \c int64_t, \c BigInteger (when GMP is installed).

diff --git a/src/DGtal/arithmetic/LatticePolytope2D.h b/src/DGtal/arithmetic/LatticePolytope2D.h
@@ -72,8 +72,7 @@ namespace DGtal
      It contains no more data than the sequence of points, except mutable
      data for intermediate computations.
 
-     It is a backport of <a
-     href="https://gforge.liris.cnrs.fr/projects/imagene">ImaGene</a>.
+     It is a backport of \e ImaGene.
 
      @tparam TSpace an arbitrary 2-dimensional model of CSpace.
      @tparam TSequence a model of boost::Sequence whose elements are points (TSpace::Point). Default is list of points.

diff --git a/src/DGtal/arithmetic/LightSternBrocot.h b/src/DGtal/arithmetic/LightSternBrocot.h
@@ -129,8 +129,7 @@ namespace DGtal
 
        @see LightSternBrocot::fraction
 
-       Essentially a backport from <a
-       href="https://gforge.liris.cnrs.fr/projects/imagene">ImaGene</a>.
+       Essentially a backport from \e ImaGene.
     */
     struct Node {
 

diff --git a/src/DGtal/arithmetic/SternBrocot.h b/src/DGtal/arithmetic/SternBrocot.h
@@ -95,8 +95,7 @@ namespace DGtal
 
        @see SternBrocot::fraction
 
-       Essentially a backport from <a
-       href="https://gforge.liris.cnrs.fr/projects/imagene">ImaGene</a>.
+       Essentially a backport from \e ImaGene.
     */
     struct Node {
 

diff --git a/src/DGtal/arithmetic/doc/moduleIrreducibleFraction.dox b/src/DGtal/arithmetic/doc/moduleIrreducibleFraction.dox
@@ -18,8 +18,7 @@ fractions are provided. They are based on the Stern-Brocot tree
 structure. With these fractions, amortized constant time operations
 are provided for computing reduced fractions.
 
-Part of the code is a backport from <a
-href="https://gforge.liris.cnrs.fr/projects/imagene">ImaGene</a>. \cite ImaGene
+Part of the code is a backport from \e ImaGene. \cite ImaGene
 [TOC]
 
 \section dgtal_irrfrac_sec1 Introduction to positive irreducible fraction.

diff --git a/src/DGtal/arithmetic/doc/packageArithmetic.dox b/src/DGtal/arithmetic/doc/packageArithmetic.dox
@@ -57,8 +57,7 @@ subsegments. Furthermore, since 0.6, it provides classes for
 representing 2D lattice polytopes (convex integer polygons) as well as
 methods to perform linear integer programming in the plane.
 
-Parts of this package are backports from
-[ImaGene](https://gforge.liris.cnrs.fr/projects/imagene): class
+Parts of this package are backports from ImaGene: class
 IntegerComputer, class SternBrocot (written with Xavier Provençal),
 algorithms StandardDSLQ0::smartDSS and StandardDSLQ0::reversedSmartDSS
 (written with Mouhammad Said), class ConvexIntegerPolygon (written

diff --git a/src/DGtal/doc/global.bib b/src/DGtal/doc/global.bib
@@ -742,8 +742,7 @@ @article{Lewiner2009a
 }
 
 @Misc{ImaGene,
-   title =       {ImaGene, {Gen}eric Digital {Ima}ge Library },
-   note =        {https://gforge.liris.cnrs.frs/projects/imagene}
+   title =       {ImaGene, {Gen}eric Digital {Ima}ge Library }
 }
 
 

diff --git a/src/DGtal/doc/mainpage.dox b/src/DGtal/doc/mainpage.dox
@@ -89,6 +89,6 @@ information.
    @defgroup Examples DGtal Examples
 
 
-[imagene]: https://gforge.liris.cnrs.fr/projects/imagene "ImaGene"
+[imagene]: "ImaGene"
 
  */
diff --git a/src/DGtal/geometry/curves/AlphaThickSegmentComputer.h b/src/DGtal/geometry/curves/AlphaThickSegmentComputer.h
@@ -117,8 +117,7 @@ namespace DGtal
  * @note You can also construct the segment by using an input point iterator in initialisation (see @ref moduleAlphaThickSegmentReco for more details)
  *
  * The proposed implementation is mainly a backport from
- * [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene) with some
- * various refactoring.
+ * ImaGene with some various refactoring.
  */
 
 

diff --git a/src/DGtal/geometry/doc/moduleAlphaThickSegmentReco.dox b/src/DGtal/geometry/doc/moduleAlphaThickSegmentReco.dox
@@ -33,8 +33,7 @@ be detected from points which are not necessarily connected nor
 necessarily digital points (RealPoint for instance).
 
 @note The proposed implementation is mainly a backport from
- [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene) with some
- various refactoring.
+ ImaGene with some various refactoring.
 
 
 [TOC]

diff --git a/src/DGtal/geometry/surfaces/COBAGenericNaivePlaneComputer.h b/src/DGtal/geometry/surfaces/COBAGenericNaivePlaneComputer.h
@@ -99,7 +99,7 @@ namespace DGtal
    * BigInteger/GMP integers. For huge diameters, the slow-down is
    * polylogarithmic with the diameter.
    *
-   * Essentially a backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * Essentially a backport from ImaGene.
    *
    @code
    typedef SpaceND<3,int> Z3;

diff --git a/src/DGtal/geometry/surfaces/COBANaivePlaneComputer.h b/src/DGtal/geometry/surfaces/COBANaivePlaneComputer.h
@@ -107,7 +107,7 @@ namespace DGtal
    * BigInteger/GMP integers. For huge diameters, the slow-down is
    * polylogarithmic with respect to the diameter.
    *
-   * Essentially a backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * Essentially a backport from ImaGene.
    *
    @code
    typedef SpaceND<3,int> Z3;

diff --git a/src/DGtal/math/MultiStatistics.h b/src/DGtal/math/MultiStatistics.h
@@ -61,8 +61,7 @@ namespace DGtal
  * 
  *
  * The proposed implementation is mainly a backport from
- * [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene) with some
- * various refactoring.
+ * ImaGene with some various refactoring.
  */
 class MultiStatistics
 {

diff --git a/src/DGtal/math/OrderedLinearRegression.h b/src/DGtal/math/OrderedLinearRegression.h
@@ -60,7 +60,7 @@ namespace DGtal
    * with interval trust from the left to the right (resp. from the
    * right to the left) of the data.
    *
-   * @note  backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * @note  backport from ImaGene.
    */
   class OrderedLinearRegression
   {

diff --git a/src/DGtal/math/Profile.h b/src/DGtal/math/Profile.h
@@ -129,8 +129,7 @@ namespace DGtal
    * @tparam TValue the type value stored in the profile.  
    * 
    * The proposed implementation is mainly a backport from
-   * [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene) with some
-   * various refactoring.
+   * ImaGene with some various refactoring.
    */
 
   template<typename TValueFunctor = functors::Identity, typename TValue = double >

diff --git a/src/DGtal/math/Signal.h b/src/DGtal/math/Signal.h
@@ -155,8 +155,7 @@ namespace DGtal
      @tparam TValue the type chosen for each sample (generally float
      or double).
      
-     This class is a backport from
-     [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+     This class is a backport from ImaGene.
   */
   template <typename TValue>
   class Signal

diff --git a/src/DGtal/math/SimpleLinearRegression.h b/src/DGtal/math/SimpleLinearRegression.h
@@ -68,7 +68,7 @@ namespace DGtal
    * also performs some tests to check if the data corresponds to a
    * linear model.
    *
-   * @note  backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * @note  backport from ImaGene.
    */
   class SimpleLinearRegression
   {

diff --git a/src/DGtal/math/Statistic.h b/src/DGtal/math/Statistic.h
@@ -59,7 +59,7 @@ namespace DGtal
     efficiency. For multiple variables, sample storage and others,
     see Statistics class.
 
-    Backported from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene). \cite Lachaud03b
+    Backported from ImaGene. \cite Lachaud03b
     
     @see testStatistics.cpp
 

diff --git a/src/DGtal/math/Statistic.ih b/src/DGtal/math/Statistic.ih
@@ -23,7 +23,7 @@
  *
  * Implementation of inline methods defined in Statistics.h
  * 
- * BAckport from ImaGene
+ * Backport from ImaGene
  *
  * This file is part of the DGtal library.
  */

diff --git a/src/DGtal/shapes/parametric/AccFlower2D.h b/src/DGtal/shapes/parametric/AccFlower2D.h
@@ -58,7 +58,7 @@ namespace DGtal
    * \brief Aim: Model of the concept StarShaped
    * represents any accelerated flower in the plane.
    *
-   * NB: A backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * NB: A backport from ImaGene.
    */
   template <typename TSpace>
   class AccFlower2D final:  public StarShaped2D<TSpace>

diff --git a/src/DGtal/shapes/parametric/Ellipse2D.h b/src/DGtal/shapes/parametric/Ellipse2D.h
@@ -58,7 +58,7 @@ namespace DGtal
    * \brief Aim: Model of the concept StarShaped
    * represents any ellipse in the plane.
    *
-   * NB: A backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * NB: A backport from ImaGene.
    */
   template <typename TSpace>
   class Ellipse2D final:  public StarShaped2D<TSpace>

diff --git a/src/DGtal/shapes/parametric/Flower2D.h b/src/DGtal/shapes/parametric/Flower2D.h
@@ -58,7 +58,7 @@ namespace DGtal
    * \brief Aim: Model of the concept StarShaped
    * represents any flower with k-petals in the plane.
    *
-   * NB: A backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * NB: A backport from ImaGene.
    */
   template <typename TSpace>
   class Flower2D final:  public StarShaped2D<TSpace>

diff --git a/src/DGtal/shapes/parametric/NGon2D.h b/src/DGtal/shapes/parametric/NGon2D.h
@@ -57,7 +57,7 @@ namespace DGtal
    * \brief Aim: Model of the concept StarShaped
    * represents any regular k-gon in the plane.
    *
-   * NB: A backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * NB: A backport from ImaGene.
    */
   template <typename TSpace>
   class NGon2D final:  public StarShaped2D<TSpace>

diff --git a/src/DGtal/shapes/parametric/StarShaped2D.h b/src/DGtal/shapes/parametric/StarShaped2D.h
@@ -65,7 +65,7 @@ namespace DGtal
    * StarShaped2D and its derived classes are models of
    * CEuclideanBoundedShape and CEuclideanOrientedShape.
    *
-   * NB: A backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * NB: A backport from ImaGene.
    *
    *
    * @tparam TSpace space in which the shape is defined.

diff --git a/src/DGtal/shapes/parametric/StarShaped3D.h b/src/DGtal/shapes/parametric/StarShaped3D.h
@@ -62,7 +62,7 @@ namespace DGtal
    * StarShaped3D and its derived classes are models of
    * CEuclideanBoundedShape and CEuclideanOrientedShape.
    *
-   * NB: A backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * NB: A backport from ImaGene.
    *
    *
    * @tparam TSpace space in which the shape is defined.

diff --git a/src/DGtal/topology/KhalimskyPreSpaceND.h b/src/DGtal/topology/KhalimskyPreSpaceND.h
@@ -368,7 +368,7 @@ namespace DGtal
    *
    * @tparam dim the dimension of the digital space.
    * @tparam TInteger the Integer class used to specify the arithmetic computations (default type = int32).
-   * @note Essentially a backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * @note Essentially a backport from ImaGene.
    * @see KhalimskySpaceND
    *
    */

diff --git a/src/DGtal/topology/KhalimskySpaceND.h b/src/DGtal/topology/KhalimskySpaceND.h
@@ -379,7 +379,7 @@ namespace DGtal
    *
    * @tparam dim the dimension of the digital space.
    * @tparam TInteger the Integer class used to specify the arithmetic computations (default type = int32).
-   * @note Essentially a backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * @note Essentially a backport from ImaGene.
    *
    * @warning Periodic Khalimsky space and per-dimension closure specification are new features.
    * Therefore, there is no guarantee that it is compatible with the whole DGtal library.

diff --git a/src/DGtal/topology/SurfelAdjacency.h b/src/DGtal/topology/SurfelAdjacency.h
@@ -59,7 +59,7 @@ namespace DGtal
      
      @tparam dim the number of dimension of the space.
 
-     NB: backported from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+     NB: backported from ImaGene.
   */
   template <Dimension dim>
   class SurfelAdjacency

diff --git a/src/DGtal/topology/SurfelNeighborhood.h b/src/DGtal/topology/SurfelNeighborhood.h
@@ -62,7 +62,7 @@ namespace DGtal
    * @tparam TKSpace the type of celluler grid space (for instance, a
    * KhalimskySpaceND).
    *
-   * Essentially a backport from [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+   * Essentially a backport from ImaGene.
    */
   template <typename TKSpace>
   class SurfelNeighborhood

diff --git a/src/DGtal/topology/UmbrellaComputer.h b/src/DGtal/topology/UmbrellaComputer.h
@@ -78,8 +78,7 @@ namespace DGtal
     
      Uses delegation with DigitalSurfaceTracker.
 
-     Essentially a backport from
-     [ImaGene](https://gforge.liris.cnrs.fr/projects/imagene).
+     Essentially a backport from ImaGene.
 
      @tparam TDigitalSurfaceTracker the type of the domain in which shapes are created.
    */