install with pip in CI #44

	name: Python Package using Conda

	env:
	CIBW_TEST_REQUIRES: pytest
	CIBW_TEST_COMMAND: "pytest tests"

	on: [push]

	jobs:
	build-linux:
	runs-on: ubuntu-latest

	strategy:
	max-parallel: 5
	matrix:
	python-version: ["3.8", "3.9", "3.10"]
	steps:
	- uses: actions/checkout@v3
	with:
	submodules: true
	- name: Set up Python ${{ matrix.python-version }}
	uses: conda-incubator/setup-miniconda@v2
	with:
	python-version: ${{ matrix.python-version }}
	mamba-version: "*"
	channels: conda-forge
	channel-priority: true
	activate-environment: tyssue
	environment-file: environment.yml
	- name: install tyssue github action
	shell: bash -l {0}
	run: pip install --no-build-isolation --config-settings=editable.rebuild=true -v
	- name: Lint with flake8
	shell: bash -l {0}
	run: \|
	mamba install flake8
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	shell: bash -l {0}
	run: \|
	mamba install pytest
	make test

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