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64 Open 39 Closed
64 Open 39 Closed
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Issues list

Inaccurate pseudobulk deconvolution with raw counts
#105 opened Nov 5, 2024 by emmanuelmekasha
Kind questions about BayesPrism, THX!
#104 opened Nov 3, 2024 by NPTL1201
removing outlier genes
#103 opened Oct 24, 2024 by aelhossiny
1
Can I used BayesPrism to perform deconvolution on the microarray results by the scRNAseq reference
#96 opened Aug 15, 2024 by ZhijieHanbioinfor
2
Question about calculate the immune cell fraction in bulk sequencing of tumor sample
#95 opened Aug 12, 2024 by threshold233
2
Re-input the result into the seurat object
#94 opened Jul 25, 2024 by JaneeeeeeW
1
Question and suggestion for running with large bulk sample set
#92 opened Jul 10, 2024 by FGOSeal
1
Using selected cell type markers can't improve the accuracy
#91 opened Jun 24, 2024 by sherry1000001
Using known cell type fractions
#90 opened Jun 19, 2024 by oriolpich
6
Mouse or human (?) for option "species"
#89 opened Jun 17, 2024 by yingzhang121
1
gene names of reference and mixture do not match!
#87 opened May 31, 2024 by rmontagn
2
Discrepancies Between matched Single-cell and Bulk Transcriptome Samples
#86 opened May 24, 2024 by Rui-Jing
1
How much memory consumed per core?
#84 opened May 7, 2024 by Pentayouth
1
I just want to quantify the various cell types within T cells, is this feasible?
#83 opened May 6, 2024 by M-jk22
1
Final Theta of cell state
#82 opened May 1, 2024 by RoyEHanna
3
library size normalization of inferred counts?
#77 opened Feb 6, 2024 by vravik
1
Can BayesPrism be used to deconvolute normal and disease muscle tissues to different cell types?
#76 opened Jan 15, 2024 by guodudou2
2
imput of Bulk RNA-seq have negative after romoving batch effect
#75 opened Jan 10, 2024 by Lily159753
1
Using Bayes Prism in Python
#74 opened Jan 4, 2024 by jw235
Issue with BayesPrism Gateway
#72 opened Dec 16, 2023 by soph1azhao
1
Do we need to merge our expression file (RNA-seq) and our reference file (scRNA-seq) as our input file?
#70 opened Dec 14, 2023 by misha832
1
question
#69 opened Dec 6, 2023 by iwanttoeatyo
1
Z expression matrix
#68 opened Nov 29, 2023 by martina811
7
Deconvolved estimates matching known cell type proportions
#67 opened Nov 28, 2023 by njrobins
2
cell state label is mandatory ?
#66 opened Nov 13, 2023 by martina811
2
ProTip! Find all open issues with in progress development work with linked:pr.