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FE-232 fix dev env for manifest dot py #31

FE-232 fix dev env for manifest dot py

FE-232 fix dev env for manifest dot py #31

name: PR Validation for Main
on:
pull_request:
branches:
- main
concurrency:
group: ${{ github.ref }}
cancel-in-progress: true
jobs:
pr-validation:
name: PR Validation
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: google-github-actions/[email protected]
with:
project_id: ${{ secrets.DEV_PROJECT_ID }}
service_account_key: ${{ secrets.GCP_TEST_KEY }}
export_default_credentials: true
fetch-depth: 0
- name: Set up Python 3.9 for dataflow tests
uses: actions/setup-python@v2
with:
python-version: 3.9.16
- name: Install Poetry
uses: snok/[email protected]
with:
version: 1.1.9
- name: Restore cache dependencies
uses: actions/cache@v2
env:
cache-name: cache-poetry-v2
with:
path: ~/.cache/pypoetry
key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('./orchestration/pyproject.toml') }}
restore-keys: |
${{ runner.os }}-build-${{ env.cache-name }}-
${{ runner.os }}-build-
${{ runner.os }}-
- name: Install dependencies
run: poetry install
working-directory: ${{ github.workspace }}/orchestration
- uses: olafurpg/setup-scala@v10
with:
java-version: [email protected]
- name: Check Scala formatting
run: sbt scalafmtCheckAll
- name: Scala Compile
run: sbt Compile/compile Test/compile IntegrationTest/compile
- name: Scala Test
run: sbt "set ThisBuild/coverageEnabled := true" test IntegrationTest/test coverageAggregate
- name: Publish Scala Test coverage
uses: codecov/codecov-action@v1
# We are skipping the E2E tests during PR validation until we refactor to test against TDR prod
# See FE-203 and FE-204 for complete details
# See the e2e README for instructions to run the tests locally (orchestration/hca_orchestration/tests/e2e/README.md)
# - name: Run E2E test suite
# run: poetry run pytest -v -m e2e
# working-directory: ${{ github.workspace }}/orchestration