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Expand genomes results to include assembly and linked objects #35

Expand genomes results to include assembly and linked objects

Expand genomes results to include assembly and linked objects #35

Workflow file for this run

# Workflow name
name: PyTest, Black, Pylint and Mypy
# Controls when the workflow will run
on:
# Triggers the workflow on pull request (on main and develop only) events
pull_request:
branches:
- main
- develop
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
# This workflow contains a single job called "tests"
tests:
# The type of runner that the job will run on and timeout in minutes
name: Run Python Tests, Black formatter, Pylint and Mypy
runs-on: ubuntu-latest
timeout-minutes: 10
# Include a strategy matrix in order to allow the job to run multiple times with different versions of Python
strategy:
matrix:
python-version: [3.8, 3.9]
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checks-out our repository under $GITHUB_WORKSPACE, so our job can access it
- name: Check out repository code
uses: actions/checkout@v3
# Set up Python version from the matrix
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
# Runs a set of commands installing Python dependencies using the runners shell (Run a multi-line script)
- name: Install Python dependencies
run: |
python3 -m pip install --upgrade pip
pip3 install -r requirements-dev.txt
# Run unit tests
- name: Test with pytest
run: |
export META_CLASSIFIER_PATH=$PWD/docs/metadata_classifiers/
pytest --exitfirst --verbose --failed-first
# Check code has been formatted
- name: Run Black code formatter
run: |
black . --check --verbose --diff --color
# Run Pylint
- name: Run Pylint
run: |
pylint $(git ls-files '*.py') --fail-under=9.5
# Run Mypy
- name: Run Mypy type checker
run: |
mypy graphql_service