FastMLST v0.0.16

Pandas 2.0 support

FastMLST v0.0.15

Fixed a bug introduced in version v0.0.14 which occurred when using the fasta2line and splited-output options.

FastMLST v0.0.14

now you can obtain the MLST alleles divided into individual FASTA files

FastMLST v0.0.13

What a shame!

Version v0.0.13 fixes a bug introduced in version v0.0.12 that is related to a wrongly indented code block 😭

FastMLST v0.0.12

The contigs identifier of some assemblers like unicycler is just a number, I opted to standardize all searches using strings because it did not allow to extract the alleles from the assembly

FastMLST v0.0.11

A small bug was fixed when handling extra columns in a schema

FastMLST v0.0.10

#ANewHope

In this new version, I added a new default output format when using the --scheme option. Hopefully, I didn't add any extra bugs.

FastMLST v0.0.9

• A minor bug was added in the version v0.0.8. Schemes with '/' in their names were mishandled downstream. Now is fixed.

FastMLST v0.0.8

• FastMLST now allows manual selection of the scheme via ´--scheme´ and also allows to see the supported schemes via ´--scheme-list´
• A couple of errors are adjusted on the scoring system when the genome has multiple hits
• A big bug was present since version 0.0.1 is now fixed: The schemes that were obtained from PubMLST were not handled correctly. Now, the 150 schemes of PubMLST are available in FastMLST. The developer is ashamed.

FastMLST v0.0.7

• Reformated the FASTA file header, making it more simple (added new options --longheader to use the previous header)
• Insertion is labelled as (?)
• Grup by gene and select the best hit is now more simple