Skip to content

Code for the analysis of the antimicrobial resistance gene (ARG) dissemination across the global plasmidome

License

Notifications You must be signed in to change notification settings

ErillLab/arg_gc

Repository files navigation

arg_gc

Code for the analysis of the antimicrobial resistance gene (ARG) dissemination across the global plasmidome.

The idea of this project is to systematically assess the dissemination of ARG analyzing their %GC distribution in the PLSDB plasmid database. The code located in this repository works (1) predicting ARG in the PLSDB database using the CARD protein sequences as queries, (2) retrieving the predicted ARG and host %GC content, (3) computing the dissemination index using protein similarity and %GC data.

Citation

Sánchez-Osuna M, Barbé J, Erill I. Systematic In Silico Assessment of Antimicrobial Resistance Dissemination across the Global Plasmidome. Antibiotics. 2023; 12(2):281. https://doi.org/10.3390/antibiotics12020281

About

Code for the analysis of the antimicrobial resistance gene (ARG) dissemination across the global plasmidome

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published