Merge pull request #278 from FNNDSC/case-sensitive

Case sensitive plugin names
FNNDSC · Jul 7, 2021 · 8887970 · 8887970
2 parents 095d947 + 985b0fe
commit 8887970
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Showing 5 changed files with 18 additions and 18 deletions.
diff --git a/src/containers/Layout/Header.tsx b/src/containers/Layout/Header.tsx
@@ -41,7 +41,7 @@ const Header: React.FC<IHeaderProps> = ({ onNavToggle, user }: IHeaderProps) =>
       <React.Fragment>
         <Brand src={brandImg} alt="ChRIS Logo" />
         <Badge key={4} style={BadgeStyle}>
-          <span>Version: 1.4.6</span>
+          <span>Version: 1.4.7</span>
         </Badge>
         <Badge key={3} style={BadgeStyle}>
           <span>

diff --git a/src/store/workflows/setup/create workflows/fastsurfer.ts b/src/store/workflows/setup/create workflows/fastsurfer.ts
@@ -17,7 +17,7 @@ export function* runFastsurferWorkflow(
     imageFile: "'m:%_nospc|-_ProtocolName.jpg'",
     imageScale: "3:none",
   };
-  const pfdicomTagExtract = pluginList["pl-pfdicom_tagextract"];
+  const pfdicomTagExtract = pluginList["pl-pfdicom_tagExtract"];
 
   yield client.createPluginInstance(
     pfdicomTagExtract.data.id,
@@ -32,7 +32,7 @@ export function* runFastsurferWorkflow(
     tagInfo:
       "'PatientName:%_name|patientID_PatientName ++ PatientID:%_md5|7_PatientID ++ PatientID:%_md5|7_PatientID ++ AccessionNumber:%_md5|8_AccessionNumber ++ PatientBirthDate:%_strmsk|******01_PatientBirthDate ++ re:.*hysician:%_md5|4_#tag ++ re:.*stitution:#tag ++ re:.*stitution:#tag'",
   };
-  const pfdicomTagSub = pluginList["pl-pfdicom_tagsub"];
+  const pfdicomTagSub = pluginList["pl-pfdicom_tagSub"];
   const pfdicomTagSubInstance: PluginInstance =
     yield client.createPluginInstance(pfdicomTagSub.data.id, pfdicomTagSubArgs);
 
@@ -101,7 +101,7 @@ export function* runFastsurferWorkflow(
   };
   yield client.createPluginInstance(plPfdoRun.data.id, plPfdoRunArgs);
 
-  const plMgz2LutReport = pluginList["pl-mgz2lut_report"];
+  const plMgz2LutReport = pluginList["pl-mgz2LUT_report"];
   const plMgz2LutReportArgs = {
     title: "aseg-report",
     previous_id: plFastsurferInstance.data.id,

diff --git a/src/store/workflows/setup/create workflows/fetalReconstruction.ts b/src/store/workflows/setup/create workflows/fetalReconstruction.ts
@@ -21,7 +21,7 @@ export function* runFetalReconstructionWorkflow(
     );
 
   const plAntsN4BiasFieldCorrection =
-    pluginList["pl-ants_n4biasfieldcorrection"];
+    pluginList["pl-ANTs_N4BiasFieldCorrection"];
   const plAntsN4BiasFieldCorrectionArgs = {
     previous_id: plFetalBrainMaskInstance.data.id,
     inputPathFilter: "extracted/0.0/*.nii",

diff --git a/src/store/workflows/setup/create workflows/freesurfer.ts b/src/store/workflows/setup/create workflows/freesurfer.ts
@@ -18,7 +18,7 @@ export function* runFreesurferWorkflow(
     imageFile: "m:%_nospc|-_ProtocolName.jpg",
     imageScale: "3:none",
   };
-  const pfdicomTagExtract = pluginList["pl-pfdicom_tagextract"];
+  const pfdicomTagExtract = pluginList["pl-pfdicom_tagExtract"];
 
   yield client.createPluginInstance(
     pfdicomTagExtract.data.id,
@@ -33,7 +33,7 @@ export function* runFreesurferWorkflow(
     tagInfo:
       "'PatientName:%_name|patientID_PatientName ++ PatientID:%_md5|7_PatientID ++ PatientID:%_md5|7_PatientID ++ AccessionNumber:%_md5|8_AccessionNumber ++ PatientBirthDate:%_strmsk|******01_PatientBirthDate ++ re:.*hysician:%_md5|4_#tag ++ re:.*stitution:#tag ++ re:.*stitution:#tag'",
   };
-  const pfdicomTagSub = pluginList["pl-pfdicom_tagsub"];
+  const pfdicomTagSub = pluginList["pl-pfdicom_tagSub"];
   const pfdicomTagSubInstance: PluginInstance =
     yield client.createPluginInstance(pfdicomTagSub.data.id, pfdicomTagSubArgs);
 
@@ -108,7 +108,7 @@ export function* runFreesurferWorkflow(
     };
     yield client.createPluginInstance(plPfdoRun.data.id, plPfdoRunArgs);
 
-    const plMgz2LutReport = pluginList["pl-mgz2lut_report"];
+    const plMgz2LutReport = pluginList["pl-mgz2LUT_report"];
     const plMgz2LutReportArgs = {
       title: "segmentation-report",
       previous_id: plFsHackInstance.data.id,

diff --git a/src/store/workflows/setup/index.ts b/src/store/workflows/setup/index.ts
@@ -246,39 +246,39 @@ export function* setupCovidnet(action: IActionTypeParam) {
 export function* setupInfantFreesurfer(action: IActionTypeParam) {
   const infantFreesurferPlugins = [
     "pl-dircopy",
-    "pl-pfdicom_tagsub",
-    "pl-pfdicom_tagextract",
+    "pl-pfdicom_tagSub",
+    "pl-pfdicom_tagExtract",
     "pl-fshack-infant",
     "pl-multipass",
     "pl-pfdorun",
-    "pl-mgz2lut_report",
+    "pl-mgz2LUT_report",
   ];
   yield setupFeedDetails(action, infantFreesurferPlugins, "infant-freesurfer");
 }
 
 export function* setupAdultFreesurfer(action: IActionTypeParam) {
   const adultFreesurferPlugins: string[] = [
     "pl-dircopy",
-    "pl-pfdicom_tagsub",
-    "pl-pfdicom_tagextract",
+    "pl-pfdicom_tagSub",
+    "pl-pfdicom_tagExtract",
     "pl-fshack",
     "pl-multipass",
     "pl-pfdorun",
-    "pl-mgz2lut_report",
+    "pl-mgz2LUT_report",
   ];
   yield setupFeedDetails(action, adultFreesurferPlugins, "adult-freesurfer");
 }
 
 export function* setupFastsurfer(action: IActionTypeParam) {
   const fastsurferPlugins = [
     "pl-dircopy",
-    "pl-pfdicom_tagextract",
-    "pl-pfdicom_tagsub",
+    "pl-pfdicom_tagExtract",
+    "pl-pfdicom_tagSub",
     "pl-fshack",
     "pl-fastsurfer_inference",
     "pl-multipass",
     "pl-pfdorun",
-    "pl-mgz2lut_report",
+    "pl-mgz2LUT_report",
   ];
   yield setupFeedDetails(action, fastsurferPlugins, "fastsurfer");
 }
@@ -287,7 +287,7 @@ export function* setupFetalReconstruction(action: IActionTypeParam) {
   const fetalReconstructionPlugins = [
     "pl-dircopy",
     "pl-fetal-brain-mask",
-    "pl-ants_n4biasfieldcorrection",
+    "pl-ANTs_N4BiasFieldCorrection",
     "pl-fetal-brain-assessment",
     "pl-irtk-reconstruction",
   ];