coral_reef

Repository for the coral reef image segmentation challenge of ImageCLEF 2019

link to the challenge: https://www.crowdai.org/challenges/imageclef-2019-coral-pixel-wise-parsing

installation:

clone this repo

~~~~
git clone [email protected]:RD/coral_reef.git
cd coral_reef
~~~~

clone git repository for deeplabv3+:

~~~~	
mkdir src
cd src
git clone https://github.com/jfzhang95/pytorch-deeplab-xception.git
cd ..
~~~~

create python environment (e.g. with conda) and activate it

~~~~
conda create --name coral_reef python==3.6.7
source activate coral_reef
~~~~

install pytorch

---- Cuda available, Cuda version 9.0: ----
~~~~	
conda install pytorch torchvision cudatoolkit=9.0 -c pytorch
~~~~

OR

---- Cuda not available: ---
~~~~	
conda install pytorch-cpu torchvision-cpu -c pytorch
~~~~

install requirements

~~~~
pip install --upgrade pip
pip install -r requirements.txt
~~~~