Skip to content

Issues: FunctionLab/selene

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

24 Open 80 Closed
24 Open 80 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

tangermeme backend
#197 opened May 31, 2024 by jmschrei
Is there a model fine-tuning function?
#195 opened Dec 10, 2023 by HanwenZhu98
Columns and DataType Not Explicitly Set on line 25 of download_data.py
#194 opened Nov 9, 2023 by CodeSmileBot
version update
#193 opened Jul 6, 2023 by guandailu
Model source code file should be copied to the output directory enhancement
#190 opened Dec 2, 2022 by evancofer
Loggers never close
#189 opened Nov 14, 2022 by rfriedman22
model is suitable for classification？
#182 opened Jan 12, 2022 by Jasonxu0109
Support NN models with multiple inputs
#161 opened Feb 27, 2021 by sashuIya
1
2
Support for non-classifier models in IntervalSampler and RandomSampler
#148 opened Jun 26, 2020 by laueste
1
Train and evaluate without evalute_model initialization in config does not work bug
#146 opened Jun 3, 2020 by kathyxchen
4
MPRA tutorial - testing r2 with CPU not agreeing with GPUs.
#145 opened May 25, 2020 by ilibarra
1
Prediction functions crash when filtered input is empty bug
#136 opened Jan 28, 2020 by evancofer
add parameter to append existing columns in VCF to output files in variant effect prediction enhancement
#129 opened Dec 3, 2019 by kathyxchen
@kathyxchen
Fasta file in quickstart_training config file conflicts with zenodo bug
#109 opened Aug 17, 2019 by evancofer
Add a function to export Selene-trained models to Kipoi
#62 opened Dec 13, 2018 by kathyxchen
Support models that predict continuous-valued outputs enhancement
#59 opened Dec 7, 2018 by kathyxchen
Add support for circular chromosomes enhancement
#51 opened Sep 10, 2018 by evancofer
GenomicFeatures should be able to label multiple adjacent "bins" in a sequence
#46 opened Aug 7, 2018 by kathyxchen
GTF file parser for non-DNA sequence-based training
#45 opened Aug 7, 2018 by kathyxchen
ISM "interpret" based on score (diff or logit)
#30 opened Apr 27, 2018 by kathyxchen
Adding an RNA sequence class? question
#29 opened Apr 25, 2018 by kathyxchen
1
Check for a strand column in the tabix-indexed file
#26 opened Apr 19, 2018 by kathyxchen
speed up in silico mutagenesis enhancement
#23 opened Apr 13, 2018 by kathyxchen
1
Create a sampler that uses queries from SQL/pandas? question
#19 opened Apr 13, 2018 by kathyxchen
ProTip! Find all open issues with in progress development work with linked:pr.